Hb_019253_010

Information

Type -
Description -
Location Contig19253: 17307-18164
Sequence    

Annotation

kegg
ID pop:POPTR_0013s04170g
description POPTRDRAFT_571077; DNA-binding family protein
nr
ID XP_002319649.1
description DNA-binding family protein [Populus trichocarpa]
swissprot
ID Q8GWQ2
description AT-hook motif nuclear-localized protein 20 OS=Arabidopsis thaliana GN=AHL20 PE=2 SV=1
trembl
ID B9I5L9
description DNA-binding family protein OS=Populus trichocarpa GN=POPTR_0013s04170g PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding protein escarola

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019253_010 0.0 - - DNA-binding family protein [Populus trichocarpa]
2 Hb_127507_010 0.2246627788 - - PREDICTED: uncharacterized protein LOC104814513 [Tarenaya hassleriana]
3 Hb_011772_010 0.2253206444 - - -
4 Hb_001900_130 0.2407863003 - - PREDICTED: uncharacterized protein LOC105632667 [Jatropha curcas]
5 Hb_000946_030 0.2482084089 - - hypothetical protein JCGZ_10707 [Jatropha curcas]
6 Hb_000330_120 0.2555246451 - - PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like [Nelumbo nucifera]
7 Hb_010866_010 0.2563130295 - - PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera]
8 Hb_000300_450 0.2590846748 - - PREDICTED: caffeic acid 3-O-methyltransferase-like isoform X1 [Citrus sinensis]
9 Hb_010761_030 0.2593817052 - - cytochrome P450, putative [Ricinus communis]
10 Hb_181968_010 0.2632599779 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
11 Hb_136092_010 0.2653208377 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
12 Hb_011671_420 0.2674243841 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
13 Hb_145211_010 0.2687892463 - - hypothetical protein M569_05648, partial [Genlisea aurea]
14 Hb_000675_060 0.275041069 - - cytochrome P450, putative [Ricinus communis]
15 Hb_002566_010 0.2762988424 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
16 Hb_002555_030 0.2769320629 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Malus domestica]
17 Hb_112203_010 0.2772798469 - - -
18 Hb_002960_170 0.2804519613 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Jatropha curcas]
19 Hb_059780_010 0.2834992991 - - PREDICTED: uncharacterized protein LOC104885482, partial [Beta vulgaris subsp. vulgaris]
20 Hb_006651_010 0.2848795715 - - PREDICTED: protein disulfide isomerase-like 1-4-like [Citrus sinensis]

Gene co-expression network

sample Hb_019253_010 Hb_019253_010 Hb_127507_010 Hb_127507_010 Hb_019253_010--Hb_127507_010 Hb_011772_010 Hb_011772_010 Hb_019253_010--Hb_011772_010 Hb_001900_130 Hb_001900_130 Hb_019253_010--Hb_001900_130 Hb_000946_030 Hb_000946_030 Hb_019253_010--Hb_000946_030 Hb_000330_120 Hb_000330_120 Hb_019253_010--Hb_000330_120 Hb_010866_010 Hb_010866_010 Hb_019253_010--Hb_010866_010 Hb_010761_030 Hb_010761_030 Hb_127507_010--Hb_010761_030 Hb_121441_010 Hb_121441_010 Hb_127507_010--Hb_121441_010 Hb_000149_090 Hb_000149_090 Hb_127507_010--Hb_000149_090 Hb_009510_060 Hb_009510_060 Hb_127507_010--Hb_009510_060 Hb_010926_030 Hb_010926_030 Hb_127507_010--Hb_010926_030 Hb_064482_010 Hb_064482_010 Hb_127507_010--Hb_064482_010 Hb_018202_060 Hb_018202_060 Hb_011772_010--Hb_018202_060 Hb_002965_130 Hb_002965_130 Hb_011772_010--Hb_002965_130 Hb_136092_010 Hb_136092_010 Hb_011772_010--Hb_136092_010 Hb_011772_010--Hb_000330_120 Hb_002570_050 Hb_002570_050 Hb_011772_010--Hb_002570_050 Hb_000380_130 Hb_000380_130 Hb_001900_130--Hb_000380_130 Hb_011671_420 Hb_011671_420 Hb_001900_130--Hb_011671_420 Hb_008768_010 Hb_008768_010 Hb_001900_130--Hb_008768_010 Hb_000422_020 Hb_000422_020 Hb_001900_130--Hb_000422_020 Hb_033622_020 Hb_033622_020 Hb_001900_130--Hb_033622_020 Hb_025526_010 Hb_025526_010 Hb_001900_130--Hb_025526_010 Hb_000946_030--Hb_010866_010 Hb_000946_030--Hb_000330_120 Hb_000946_030--Hb_002965_130 Hb_145211_010 Hb_145211_010 Hb_000946_030--Hb_145211_010 Hb_059780_010 Hb_059780_010 Hb_000946_030--Hb_059780_010 Hb_000675_040 Hb_000675_040 Hb_000946_030--Hb_000675_040 Hb_000330_120--Hb_002965_130 Hb_078081_020 Hb_078081_020 Hb_000330_120--Hb_078081_020 Hb_094439_030 Hb_094439_030 Hb_000330_120--Hb_094439_030 Hb_026284_010 Hb_026284_010 Hb_000330_120--Hb_026284_010 Hb_000751_050 Hb_000751_050 Hb_000330_120--Hb_000751_050 Hb_135684_010 Hb_135684_010 Hb_010866_010--Hb_135684_010 Hb_000363_020 Hb_000363_020 Hb_010866_010--Hb_000363_020 Hb_015227_010 Hb_015227_010 Hb_010866_010--Hb_015227_010 Hb_001959_280 Hb_001959_280 Hb_010866_010--Hb_001959_280 Hb_169514_010 Hb_169514_010 Hb_010866_010--Hb_169514_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0224219 0 0.0220717 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0484119 0 0.254157 0.0978274

CAGE analysis