Hb_019253_020

Information

Type -
Description -
Location Contig19253: 22367-26613
Sequence    

Annotation

kegg
ID pop:POPTR_0013s04180g
description POPTRDRAFT_834543; hypothetical protein
nr
ID XP_012089310.1
description PREDICTED: uncharacterized protein LOC105647727 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JLN6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23531 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19182: 23474-26463
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019253_020 0.0 - - PREDICTED: uncharacterized protein LOC105647727 [Jatropha curcas]
2 Hb_005357_030 0.0666498867 - - PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic [Jatropha curcas]
3 Hb_001138_050 0.0668403074 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
4 Hb_000656_400 0.072897903 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
5 Hb_000251_130 0.0737915419 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
6 Hb_000613_140 0.0792012991 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
7 Hb_006332_020 0.083129533 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
8 Hb_000720_120 0.0833521113 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
9 Hb_001571_040 0.0834104126 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
10 Hb_004920_040 0.0837050321 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
11 Hb_004223_280 0.086026781 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
12 Hb_018838_030 0.0872272581 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000532_070 0.0879969878 - - PREDICTED: exosome complex component RRP42-like [Jatropha curcas]
14 Hb_002374_160 0.0885898397 - - PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X1 [Jatropha curcas]
15 Hb_001159_140 0.0888885108 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
16 Hb_001259_090 0.0896088669 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
17 Hb_003126_080 0.0900860264 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
18 Hb_001226_160 0.0911495358 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
19 Hb_001766_110 0.0912552335 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
20 Hb_003020_230 0.0912570654 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]

Gene co-expression network

sample Hb_019253_020 Hb_019253_020 Hb_005357_030 Hb_005357_030 Hb_019253_020--Hb_005357_030 Hb_001138_050 Hb_001138_050 Hb_019253_020--Hb_001138_050 Hb_000656_400 Hb_000656_400 Hb_019253_020--Hb_000656_400 Hb_000251_130 Hb_000251_130 Hb_019253_020--Hb_000251_130 Hb_000613_140 Hb_000613_140 Hb_019253_020--Hb_000613_140 Hb_006332_020 Hb_006332_020 Hb_019253_020--Hb_006332_020 Hb_004223_280 Hb_004223_280 Hb_005357_030--Hb_004223_280 Hb_002685_170 Hb_002685_170 Hb_005357_030--Hb_002685_170 Hb_007590_050 Hb_007590_050 Hb_005357_030--Hb_007590_050 Hb_005357_030--Hb_001138_050 Hb_001226_160 Hb_001226_160 Hb_005357_030--Hb_001226_160 Hb_000398_180 Hb_000398_180 Hb_001138_050--Hb_000398_180 Hb_000720_120 Hb_000720_120 Hb_001138_050--Hb_000720_120 Hb_001377_290 Hb_001377_290 Hb_001138_050--Hb_001377_290 Hb_001259_090 Hb_001259_090 Hb_001138_050--Hb_001259_090 Hb_003126_080 Hb_003126_080 Hb_000656_400--Hb_003126_080 Hb_000920_180 Hb_000920_180 Hb_000656_400--Hb_000920_180 Hb_000656_400--Hb_001226_160 Hb_118707_030 Hb_118707_030 Hb_000656_400--Hb_118707_030 Hb_000656_400--Hb_001259_090 Hb_001766_110 Hb_001766_110 Hb_000656_400--Hb_001766_110 Hb_000251_130--Hb_001226_160 Hb_000251_130--Hb_000656_400 Hb_002183_090 Hb_002183_090 Hb_000251_130--Hb_002183_090 Hb_000251_130--Hb_005357_030 Hb_172632_090 Hb_172632_090 Hb_000251_130--Hb_172632_090 Hb_000613_140--Hb_000720_120 Hb_003020_230 Hb_003020_230 Hb_000613_140--Hb_003020_230 Hb_000613_140--Hb_004223_280 Hb_000926_250 Hb_000926_250 Hb_000613_140--Hb_000926_250 Hb_003615_010 Hb_003615_010 Hb_000613_140--Hb_003615_010 Hb_000510_130 Hb_000510_130 Hb_000613_140--Hb_000510_130 Hb_006332_020--Hb_000398_180 Hb_004195_160 Hb_004195_160 Hb_006332_020--Hb_004195_160 Hb_028872_140 Hb_028872_140 Hb_006332_020--Hb_028872_140 Hb_001571_040 Hb_001571_040 Hb_006332_020--Hb_001571_040 Hb_006332_020--Hb_001226_160 Hb_002876_110 Hb_002876_110 Hb_006332_020--Hb_002876_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.0188 14.4904 4.78818 9.70521 22.066 26.6898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.3856 40.6481 21.208 17.1511 10.5891

CAGE analysis