Hb_019253_030

Information

Type -
Description -
Location Contig19253: 29363-30599
Sequence    

Annotation

kegg
ID cit:102615646
description peptidyl-prolyl cis-trans isomerase CYP19-3-like
nr
ID XP_006487732.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-3-like [Citrus sinensis]
swissprot
ID Q38867
description Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=2 SV=2
trembl
ID A0A067EFK3
description Peptidyl-prolyl cis-trans isomerase OS=Citrus sinensis GN=CISIN_1g030603mg PE=3 SV=1
Gene Ontology
ID GO:0005739
description peptidyl-prolyl cis-trans isomerase cyp19-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19184: 27919-30054
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019253_030 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-3-like [Citrus sinensis]
2 Hb_002259_070 0.0594910515 - - taz protein, putative [Ricinus communis]
3 Hb_143766_050 0.0750039966 - - PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]
4 Hb_010261_060 0.0809472666 - - unnamed protein product [Coffea canephora]
5 Hb_000574_160 0.0814377601 - - PREDICTED: arogenate dehydrogenase 2, chloroplastic [Jatropha curcas]
6 Hb_009686_030 0.087952628 - - -
7 Hb_001540_010 0.0893707839 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
8 Hb_005511_160 0.0924420125 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
9 Hb_000487_250 0.0949657503 - - 60S ribosomal protein L27e, putative [Ricinus communis]
10 Hb_000127_180 0.0972328527 - - 40S ribosomal protein S18, putative [Ricinus communis]
11 Hb_003734_140 0.0980883643 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000012_220 0.1022794595 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000510_110 0.1026175483 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
14 Hb_000025_530 0.1027721887 - - PREDICTED: reactive oxygen species modulator 1 [Jatropha curcas]
15 Hb_000970_010 0.1028504025 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
16 Hb_005618_140 0.1035521175 - - PREDICTED: uncharacterized protein LOC105642706 [Jatropha curcas]
17 Hb_089839_020 0.1051291404 - - hypothetical protein POPTR_0017s14180g [Populus trichocarpa]
18 Hb_002686_020 0.1054440495 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
19 Hb_001246_060 0.1059748629 - - ATP binding protein, putative [Ricinus communis]
20 Hb_000029_200 0.1066277681 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]

Gene co-expression network

sample Hb_019253_030 Hb_019253_030 Hb_002259_070 Hb_002259_070 Hb_019253_030--Hb_002259_070 Hb_143766_050 Hb_143766_050 Hb_019253_030--Hb_143766_050 Hb_010261_060 Hb_010261_060 Hb_019253_030--Hb_010261_060 Hb_000574_160 Hb_000574_160 Hb_019253_030--Hb_000574_160 Hb_009686_030 Hb_009686_030 Hb_019253_030--Hb_009686_030 Hb_001540_010 Hb_001540_010 Hb_019253_030--Hb_001540_010 Hb_005511_160 Hb_005511_160 Hb_002259_070--Hb_005511_160 Hb_012753_230 Hb_012753_230 Hb_002259_070--Hb_012753_230 Hb_002259_070--Hb_000574_160 Hb_001780_040 Hb_001780_040 Hb_002259_070--Hb_001780_040 Hb_002259_070--Hb_010261_060 Hb_143766_050--Hb_009686_030 Hb_003734_140 Hb_003734_140 Hb_143766_050--Hb_003734_140 Hb_143766_050--Hb_002259_070 Hb_006031_020 Hb_006031_020 Hb_143766_050--Hb_006031_020 Hb_012753_160 Hb_012753_160 Hb_143766_050--Hb_012753_160 Hb_003528_060 Hb_003528_060 Hb_010261_060--Hb_003528_060 Hb_001538_120 Hb_001538_120 Hb_010261_060--Hb_001538_120 Hb_000025_530 Hb_000025_530 Hb_010261_060--Hb_000025_530 Hb_001818_020 Hb_001818_020 Hb_010261_060--Hb_001818_020 Hb_000906_040 Hb_000906_040 Hb_000574_160--Hb_000906_040 Hb_002235_350 Hb_002235_350 Hb_000574_160--Hb_002235_350 Hb_000029_200 Hb_000029_200 Hb_000574_160--Hb_000029_200 Hb_000574_160--Hb_001780_040 Hb_156947_010 Hb_156947_010 Hb_009686_030--Hb_156947_010 Hb_008878_030 Hb_008878_030 Hb_009686_030--Hb_008878_030 Hb_002686_020 Hb_002686_020 Hb_009686_030--Hb_002686_020 Hb_009686_030--Hb_001540_010 Hb_003050_080 Hb_003050_080 Hb_001540_010--Hb_003050_080 Hb_001540_010--Hb_002686_020 Hb_001540_010--Hb_008878_030 Hb_004931_090 Hb_004931_090 Hb_001540_010--Hb_004931_090 Hb_005993_040 Hb_005993_040 Hb_001540_010--Hb_005993_040 Hb_000970_010 Hb_000970_010 Hb_001540_010--Hb_000970_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1527 3.80682 4.66863 3.10496 10.3156 8.99667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7412 32.2232 10.6228 5.66385 5.4842

CAGE analysis