Hb_019263_020

Information

Type -
Description -
Location Contig19263: 24035-25600
Sequence    

Annotation

kegg
ID pop:POPTR_0016s03790g
description POPTRDRAFT_777046; pentatricopeptide repeat-containing family protein
nr
ID XP_012085996.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]
swissprot
ID O64766
description Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1
trembl
ID A0A067JQV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22488 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019263_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]
2 Hb_013607_040 0.0641847725 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Jatropha curcas]
3 Hb_002235_280 0.066344536 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]
4 Hb_003053_020 0.0681451769 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
5 Hb_002284_200 0.0705429493 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
6 Hb_011534_030 0.0748560184 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
7 Hb_000373_130 0.0835061159 - - PREDICTED: protein FAM188A [Jatropha curcas]
8 Hb_005162_070 0.0871184151 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002878_020 0.0877801251 - - mitochondrial carrier protein, putative [Ricinus communis]
10 Hb_028515_010 0.0880546407 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
11 Hb_000617_150 0.0882122935 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
12 Hb_009803_050 0.0919802846 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
13 Hb_008695_100 0.0944648829 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
14 Hb_001663_050 0.0952554136 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
15 Hb_172932_010 0.0957728356 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_003349_090 0.0960058665 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
17 Hb_005568_120 0.0961238182 - - Prephenate dehydratase [Hevea brasiliensis]
18 Hb_000366_090 0.0965789541 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]
19 Hb_002027_040 0.0966884453 - - synapse-associated protein, putative [Ricinus communis]
20 Hb_000962_040 0.0992942769 - - heat shock protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_019263_020 Hb_019263_020 Hb_013607_040 Hb_013607_040 Hb_019263_020--Hb_013607_040 Hb_002235_280 Hb_002235_280 Hb_019263_020--Hb_002235_280 Hb_003053_020 Hb_003053_020 Hb_019263_020--Hb_003053_020 Hb_002284_200 Hb_002284_200 Hb_019263_020--Hb_002284_200 Hb_011534_030 Hb_011534_030 Hb_019263_020--Hb_011534_030 Hb_000373_130 Hb_000373_130 Hb_019263_020--Hb_000373_130 Hb_002307_170 Hb_002307_170 Hb_013607_040--Hb_002307_170 Hb_001373_180 Hb_001373_180 Hb_013607_040--Hb_001373_180 Hb_013607_040--Hb_002235_280 Hb_004846_070 Hb_004846_070 Hb_013607_040--Hb_004846_070 Hb_005162_070 Hb_005162_070 Hb_013607_040--Hb_005162_070 Hb_000072_080 Hb_000072_080 Hb_002235_280--Hb_000072_080 Hb_000617_150 Hb_000617_150 Hb_002235_280--Hb_000617_150 Hb_008695_100 Hb_008695_100 Hb_002235_280--Hb_008695_100 Hb_001140_220 Hb_001140_220 Hb_002235_280--Hb_001140_220 Hb_000783_020 Hb_000783_020 Hb_003053_020--Hb_000783_020 Hb_003697_040 Hb_003697_040 Hb_003053_020--Hb_003697_040 Hb_000985_030 Hb_000985_030 Hb_003053_020--Hb_000985_030 Hb_007904_260 Hb_007904_260 Hb_003053_020--Hb_007904_260 Hb_003053_020--Hb_011534_030 Hb_000748_130 Hb_000748_130 Hb_002284_200--Hb_000748_130 Hb_001279_340 Hb_001279_340 Hb_002284_200--Hb_001279_340 Hb_000563_250 Hb_000563_250 Hb_002284_200--Hb_000563_250 Hb_000111_450 Hb_000111_450 Hb_002284_200--Hb_000111_450 Hb_000366_090 Hb_000366_090 Hb_002284_200--Hb_000366_090 Hb_172932_010 Hb_172932_010 Hb_011534_030--Hb_172932_010 Hb_011534_030--Hb_000617_150 Hb_009113_070 Hb_009113_070 Hb_011534_030--Hb_009113_070 Hb_001454_190 Hb_001454_190 Hb_011534_030--Hb_001454_190 Hb_004837_160 Hb_004837_160 Hb_000373_130--Hb_004837_160 Hb_028515_010 Hb_028515_010 Hb_000373_130--Hb_028515_010 Hb_003349_090 Hb_003349_090 Hb_000373_130--Hb_003349_090 Hb_001519_050 Hb_001519_050 Hb_000373_130--Hb_001519_050 Hb_005568_120 Hb_005568_120 Hb_000373_130--Hb_005568_120 Hb_000567_120 Hb_000567_120 Hb_000373_130--Hb_000567_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.50436 1.15466 0.998017 1.10729 0.792266 1.61278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.14008 3.85848 4.13655 1.49262 1.76429

CAGE analysis