Hb_019280_030

Information

Type -
Description -
Location Contig19280: 20423-23271
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19204: 20515-20668 , PASA_asmbl_19205: 20694-22172
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019280_030 0.0 - - -
2 Hb_001922_150 0.0585679995 - - PREDICTED: WD repeat-containing protein 91 homolog isoform X1 [Jatropha curcas]
3 Hb_007416_340 0.0632981276 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_004097_070 0.0659678737 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
5 Hb_000200_380 0.0664206702 - - PREDICTED: uncharacterized protein LOC105636933 isoform X2 [Jatropha curcas]
6 Hb_000484_030 0.0682437171 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
7 Hb_033642_030 0.069418155 - - PREDICTED: G-protein coupled receptor 1 isoform X1 [Jatropha curcas]
8 Hb_001635_160 0.0725705837 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
9 Hb_007657_010 0.0726177134 - - ATP binding protein, putative [Ricinus communis]
10 Hb_011037_030 0.0731202748 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
11 Hb_001142_030 0.0738183984 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
12 Hb_016172_020 0.0738572618 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
13 Hb_002947_030 0.0743318342 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
14 Hb_002235_250 0.0753345072 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
15 Hb_001902_030 0.0772031447 - - PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
16 Hb_008406_200 0.0773202106 transcription factor TF Family: SNF2 conserved hypothetical protein [Ricinus communis]
17 Hb_000345_380 0.0775600018 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
18 Hb_012395_230 0.0782573078 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
19 Hb_002872_030 0.0785851744 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
20 Hb_010381_090 0.0788459241 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]

Gene co-expression network

sample Hb_019280_030 Hb_019280_030 Hb_001922_150 Hb_001922_150 Hb_019280_030--Hb_001922_150 Hb_007416_340 Hb_007416_340 Hb_019280_030--Hb_007416_340 Hb_004097_070 Hb_004097_070 Hb_019280_030--Hb_004097_070 Hb_000200_380 Hb_000200_380 Hb_019280_030--Hb_000200_380 Hb_000484_030 Hb_000484_030 Hb_019280_030--Hb_000484_030 Hb_033642_030 Hb_033642_030 Hb_019280_030--Hb_033642_030 Hb_000976_140 Hb_000976_140 Hb_001922_150--Hb_000976_140 Hb_000313_220 Hb_000313_220 Hb_001922_150--Hb_000313_220 Hb_005730_040 Hb_005730_040 Hb_001922_150--Hb_005730_040 Hb_004020_040 Hb_004020_040 Hb_001922_150--Hb_004020_040 Hb_001922_150--Hb_007416_340 Hb_003125_120 Hb_003125_120 Hb_007416_340--Hb_003125_120 Hb_003938_090 Hb_003938_090 Hb_007416_340--Hb_003938_090 Hb_007416_340--Hb_000484_030 Hb_008453_140 Hb_008453_140 Hb_007416_340--Hb_008453_140 Hb_001946_400 Hb_001946_400 Hb_007416_340--Hb_001946_400 Hb_001789_190 Hb_001789_190 Hb_004097_070--Hb_001789_190 Hb_004097_070--Hb_000200_380 Hb_007657_010 Hb_007657_010 Hb_004097_070--Hb_007657_010 Hb_000346_060 Hb_000346_060 Hb_004097_070--Hb_000346_060 Hb_001635_040 Hb_001635_040 Hb_004097_070--Hb_001635_040 Hb_000343_250 Hb_000343_250 Hb_000200_380--Hb_000343_250 Hb_002732_040 Hb_002732_040 Hb_000200_380--Hb_002732_040 Hb_000200_380--Hb_033642_030 Hb_002272_130 Hb_002272_130 Hb_000200_380--Hb_002272_130 Hb_000484_030--Hb_008453_140 Hb_001409_020 Hb_001409_020 Hb_000484_030--Hb_001409_020 Hb_001408_040 Hb_001408_040 Hb_000484_030--Hb_001408_040 Hb_000484_030--Hb_003125_120 Hb_000696_230 Hb_000696_230 Hb_000484_030--Hb_000696_230 Hb_000789_310 Hb_000789_310 Hb_033642_030--Hb_000789_310 Hb_033642_030--Hb_002272_130 Hb_007416_300 Hb_007416_300 Hb_033642_030--Hb_007416_300 Hb_002947_030 Hb_002947_030 Hb_033642_030--Hb_002947_030 Hb_000060_090 Hb_000060_090 Hb_033642_030--Hb_000060_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.73626 3.0765 3.54945 3.85487 3.15032 4.58621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.23985 3.64801 2.77237 2.0337 3.47957

CAGE analysis