Hb_019280_050

Information

Type -
Description -
Location Contig19280: 45254-55101
Sequence    

Annotation

kegg
ID rcu:RCOM_1742220
description DNA binding protein, putative
nr
ID XP_012074200.1
description PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 [Jatropha curcas]
swissprot
ID Q8RWJ7
description Protein SAWADEE HOMEODOMAIN HOMOLOG 2 OS=Arabidopsis thaliana GN=SHH2 PE=2 SV=1
trembl
ID A0A067KMR4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09823 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19210: 45355-50689 , PASA_asmbl_19211: 52526-54662
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019280_050 0.0 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 [Jatropha curcas]
2 Hb_010098_050 0.06728499 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
3 Hb_001470_030 0.074866432 - - PREDICTED: MORC family CW-type zinc finger protein 3 isoform X2 [Jatropha curcas]
4 Hb_000729_030 0.0788436903 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
5 Hb_000373_070 0.0799374171 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
6 Hb_003124_150 0.0806485103 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
7 Hb_008013_050 0.0806996154 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420 [Jatropha curcas]
8 Hb_003151_040 0.0814994307 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
9 Hb_006615_240 0.082069418 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
10 Hb_010368_010 0.0825015945 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
11 Hb_000146_070 0.0830174011 - - PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha curcas]
12 Hb_000336_150 0.0830840392 - - ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]
13 Hb_003582_060 0.0853435488 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
14 Hb_000367_160 0.0853529978 - - PREDICTED: SNAP25 homologous protein SNAP33 [Populus euphratica]
15 Hb_000460_030 0.0864076106 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
16 Hb_004324_090 0.0867277367 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
17 Hb_003052_190 0.0881144155 - - PREDICTED: uncharacterized protein LOC105641937 isoform X2 [Jatropha curcas]
18 Hb_001123_040 0.0885939731 - - PREDICTED: R3H domain-containing protein 1-like [Jatropha curcas]
19 Hb_004410_080 0.0892586299 - - cellular nucleic acid binding protein, putative [Ricinus communis]
20 Hb_000310_020 0.0895167149 - - hypothetical protein JCGZ_20797 [Jatropha curcas]

Gene co-expression network

sample Hb_019280_050 Hb_019280_050 Hb_010098_050 Hb_010098_050 Hb_019280_050--Hb_010098_050 Hb_001470_030 Hb_001470_030 Hb_019280_050--Hb_001470_030 Hb_000729_030 Hb_000729_030 Hb_019280_050--Hb_000729_030 Hb_000373_070 Hb_000373_070 Hb_019280_050--Hb_000373_070 Hb_003124_150 Hb_003124_150 Hb_019280_050--Hb_003124_150 Hb_008013_050 Hb_008013_050 Hb_019280_050--Hb_008013_050 Hb_006615_240 Hb_006615_240 Hb_010098_050--Hb_006615_240 Hb_001341_150 Hb_001341_150 Hb_010098_050--Hb_001341_150 Hb_000205_090 Hb_000205_090 Hb_010098_050--Hb_000205_090 Hb_000431_170 Hb_000431_170 Hb_010098_050--Hb_000431_170 Hb_010098_050--Hb_008013_050 Hb_001030_020 Hb_001030_020 Hb_001470_030--Hb_001030_020 Hb_002078_350 Hb_002078_350 Hb_001470_030--Hb_002078_350 Hb_003938_090 Hb_003938_090 Hb_001470_030--Hb_003938_090 Hb_010423_030 Hb_010423_030 Hb_001470_030--Hb_010423_030 Hb_000152_500 Hb_000152_500 Hb_001470_030--Hb_000152_500 Hb_001470_030--Hb_000373_070 Hb_000869_080 Hb_000869_080 Hb_000729_030--Hb_000869_080 Hb_000261_020 Hb_000261_020 Hb_000729_030--Hb_000261_020 Hb_000336_150 Hb_000336_150 Hb_000729_030--Hb_000336_150 Hb_013358_040 Hb_013358_040 Hb_000729_030--Hb_013358_040 Hb_000729_030--Hb_003124_150 Hb_010368_010 Hb_010368_010 Hb_000729_030--Hb_010368_010 Hb_003151_040 Hb_003151_040 Hb_000373_070--Hb_003151_040 Hb_000215_110 Hb_000215_110 Hb_000373_070--Hb_000215_110 Hb_005846_040 Hb_005846_040 Hb_000373_070--Hb_005846_040 Hb_001163_050 Hb_001163_050 Hb_000373_070--Hb_001163_050 Hb_000331_550 Hb_000331_550 Hb_000373_070--Hb_000331_550 Hb_000373_070--Hb_002078_350 Hb_000310_020 Hb_000310_020 Hb_003124_150--Hb_000310_020 Hb_000928_070 Hb_000928_070 Hb_003124_150--Hb_000928_070 Hb_000505_130 Hb_000505_130 Hb_003124_150--Hb_000505_130 Hb_003124_150--Hb_000336_150 Hb_000580_020 Hb_000580_020 Hb_003124_150--Hb_000580_020 Hb_006059_050 Hb_006059_050 Hb_008013_050--Hb_006059_050 Hb_002301_150 Hb_002301_150 Hb_008013_050--Hb_002301_150 Hb_003502_060 Hb_003502_060 Hb_008013_050--Hb_003502_060 Hb_008013_050--Hb_003151_040 Hb_000030_030 Hb_000030_030 Hb_008013_050--Hb_000030_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.18365 11.4958 15.0436 8.03552 7.22501 10.4145
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.4355 18.3251 13.5451 10.8356 9.6471

CAGE analysis