Hb_019299_010

Information

Type -
Description -
Location Contig19299: 21993-22661
Sequence    

Annotation

kegg
ID rcu:RCOM_1721630
description zinc finger protein, putative
nr
ID XP_002521131.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q7ZW78
description E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2 SV=2
trembl
ID B9S562
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1721630 PE=4 SV=1
Gene Ontology
ID GO:0005515
description zinc finger-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19213: 22119-22401
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019299_010 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_011930_090 0.0541007558 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
3 Hb_009851_120 0.0720470236 - - PREDICTED: RING-H2 zinc finger protein RHA4a [Jatropha curcas]
4 Hb_187906_010 0.0796661567 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
5 Hb_000087_160 0.0815262757 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_012217_010 0.0875717126 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
7 Hb_001401_110 0.0878672003 - - hypothetical protein JCGZ_04272 [Jatropha curcas]
8 Hb_000754_010 0.0892927754 - - unnamed protein product [Vitis vinifera]
9 Hb_006061_020 0.0900277692 transcription factor TF Family: bZIP bZIP family protein [Populus trichocarpa]
10 Hb_180293_010 0.0912264461 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
11 Hb_004807_070 0.0933693265 - - hypothetical protein POPTR_0004s17330g, partial [Populus trichocarpa]
12 Hb_000438_180 0.0965456295 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
13 Hb_001269_430 0.0984936396 - - hypothetical protein JCGZ_04286 [Jatropha curcas]
14 Hb_006018_020 0.1030605235 - - conserved hypothetical protein [Ricinus communis]
15 Hb_159791_010 0.1063516015 - - PREDICTED: cytochrome P450 84A1 [Jatropha curcas]
16 Hb_000959_170 0.1067614039 - - Cell division protein kinase 7, putative [Ricinus communis]
17 Hb_000628_070 0.1075302516 - - -
18 Hb_000152_630 0.1094548434 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Jatropha curcas]
19 Hb_000025_150 0.1107972012 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
20 Hb_001712_010 0.1118518108 - - PREDICTED: phosphate transporter PHO1 homolog 1 [Jatropha curcas]

Gene co-expression network

sample Hb_019299_010 Hb_019299_010 Hb_011930_090 Hb_011930_090 Hb_019299_010--Hb_011930_090 Hb_009851_120 Hb_009851_120 Hb_019299_010--Hb_009851_120 Hb_187906_010 Hb_187906_010 Hb_019299_010--Hb_187906_010 Hb_000087_160 Hb_000087_160 Hb_019299_010--Hb_000087_160 Hb_012217_010 Hb_012217_010 Hb_019299_010--Hb_012217_010 Hb_001401_110 Hb_001401_110 Hb_019299_010--Hb_001401_110 Hb_011930_090--Hb_012217_010 Hb_011930_090--Hb_000087_160 Hb_001269_430 Hb_001269_430 Hb_011930_090--Hb_001269_430 Hb_011930_090--Hb_009851_120 Hb_000438_180 Hb_000438_180 Hb_011930_090--Hb_000438_180 Hb_000999_060 Hb_000999_060 Hb_009851_120--Hb_000999_060 Hb_074100_010 Hb_074100_010 Hb_009851_120--Hb_074100_010 Hb_001584_250 Hb_001584_250 Hb_009851_120--Hb_001584_250 Hb_000429_080 Hb_000429_080 Hb_009851_120--Hb_000429_080 Hb_187906_010--Hb_001401_110 Hb_187906_010--Hb_000438_180 Hb_187906_010--Hb_000087_160 Hb_000959_170 Hb_000959_170 Hb_187906_010--Hb_000959_170 Hb_187906_010--Hb_009851_120 Hb_000087_160--Hb_000959_170 Hb_159791_010 Hb_159791_010 Hb_000087_160--Hb_159791_010 Hb_000230_220 Hb_000230_220 Hb_000087_160--Hb_000230_220 Hb_007441_100 Hb_007441_100 Hb_012217_010--Hb_007441_100 Hb_032260_040 Hb_032260_040 Hb_012217_010--Hb_032260_040 Hb_000847_110 Hb_000847_110 Hb_012217_010--Hb_000847_110 Hb_001541_170 Hb_001541_170 Hb_012217_010--Hb_001541_170 Hb_001401_110--Hb_000438_180 Hb_004807_070 Hb_004807_070 Hb_001401_110--Hb_004807_070 Hb_001401_110--Hb_001269_430 Hb_001712_010 Hb_001712_010 Hb_001401_110--Hb_001712_010 Hb_092272_010 Hb_092272_010 Hb_001401_110--Hb_092272_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.896432 0.435927 8.25104 0.0374844 0.0662179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.533063

CAGE analysis