Hb_019299_020

Information

Type -
Description -
Location Contig19299: 23036-25994
Sequence    

Annotation

kegg
ID pop:POPTR_0002s25300g
description POPTRDRAFT_553251; kinase-like protein TMKL1 precursor
nr
ID XP_012085161.1
description PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
swissprot
ID P33543
description Putative kinase-like protein TMKL1 OS=Arabidopsis thaliana GN=TMKL1 PE=1 SV=1
trembl
ID A0A067K3N0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17577 PE=4 SV=1
Gene Ontology
ID GO:0004672
description kinase-like protein tmkl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19215: 22809-24925 , PASA_asmbl_19216: 25261-25720 , PASA_asmbl_19217: 25758-25859
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019299_020 0.0 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
2 Hb_000139_460 0.073431817 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
3 Hb_000740_080 0.0903006926 - - -
4 Hb_002304_110 0.0982018647 - - hypothetical protein MIMGU_mgv1a023246mg [Erythranthe guttata]
5 Hb_001257_140 0.1034285101 - - Gb:AAF02129.1, putative [Theobroma cacao]
6 Hb_010863_020 0.1045426769 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X1 [Jatropha curcas]
7 Hb_000352_360 0.1055847954 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
8 Hb_000813_020 0.1095476673 - - PREDICTED: metacaspase-3-like [Jatropha curcas]
9 Hb_000220_020 0.1117903769 - - hypothetical protein CICLE_v10017575mg [Citrus clementina]
10 Hb_001296_010 0.1124241011 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001006_300 0.1144433815 - - lipid binding protein, putative [Ricinus communis]
12 Hb_005144_150 0.1169169991 - - hypothetical protein VITISV_013572 [Vitis vinifera]
13 Hb_020831_060 0.1199888284 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
14 Hb_003858_070 0.120696323 - - PREDICTED: uncharacterized protein LOC105647879 [Jatropha curcas]
15 Hb_170077_020 0.1209579068 - - PREDICTED: probable serine incorporator [Jatropha curcas]
16 Hb_006351_040 0.121972883 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001898_030 0.1226216562 - - protein kinase-coding resistance protein [Nicotiana repanda]
18 Hb_002768_040 0.130033708 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001091_040 0.1301272576 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
20 Hb_001300_030 0.130439838 - - hypothetical protein JCGZ_13871 [Jatropha curcas]

Gene co-expression network

sample Hb_019299_020 Hb_019299_020 Hb_000139_460 Hb_000139_460 Hb_019299_020--Hb_000139_460 Hb_000740_080 Hb_000740_080 Hb_019299_020--Hb_000740_080 Hb_002304_110 Hb_002304_110 Hb_019299_020--Hb_002304_110 Hb_001257_140 Hb_001257_140 Hb_019299_020--Hb_001257_140 Hb_010863_020 Hb_010863_020 Hb_019299_020--Hb_010863_020 Hb_000352_360 Hb_000352_360 Hb_019299_020--Hb_000352_360 Hb_001091_040 Hb_001091_040 Hb_000139_460--Hb_001091_040 Hb_003371_030 Hb_003371_030 Hb_000139_460--Hb_003371_030 Hb_000139_460--Hb_002304_110 Hb_006351_040 Hb_006351_040 Hb_000139_460--Hb_006351_040 Hb_005144_150 Hb_005144_150 Hb_000139_460--Hb_005144_150 Hb_000897_010 Hb_000897_010 Hb_000740_080--Hb_000897_010 Hb_000149_020 Hb_000149_020 Hb_000740_080--Hb_000149_020 Hb_002768_040 Hb_002768_040 Hb_000740_080--Hb_002768_040 Hb_004970_100 Hb_004970_100 Hb_000740_080--Hb_004970_100 Hb_000740_080--Hb_000352_360 Hb_001898_030 Hb_001898_030 Hb_002304_110--Hb_001898_030 Hb_000813_020 Hb_000813_020 Hb_002304_110--Hb_000813_020 Hb_034713_010 Hb_034713_010 Hb_002304_110--Hb_034713_010 Hb_009367_070 Hb_009367_070 Hb_002304_110--Hb_009367_070 Hb_000334_090 Hb_000334_090 Hb_002304_110--Hb_000334_090 Hb_017061_010 Hb_017061_010 Hb_002304_110--Hb_017061_010 Hb_001257_140--Hb_005144_150 Hb_003849_170 Hb_003849_170 Hb_001257_140--Hb_003849_170 Hb_001257_140--Hb_000352_360 Hb_001257_140--Hb_010863_020 Hb_170077_020 Hb_170077_020 Hb_001257_140--Hb_170077_020 Hb_003858_070 Hb_003858_070 Hb_001257_140--Hb_003858_070 Hb_013399_060 Hb_013399_060 Hb_010863_020--Hb_013399_060 Hb_010863_020--Hb_003858_070 Hb_001296_010 Hb_001296_010 Hb_010863_020--Hb_001296_010 Hb_011344_050 Hb_011344_050 Hb_010863_020--Hb_011344_050 Hb_001006_300 Hb_001006_300 Hb_010863_020--Hb_001006_300 Hb_002616_020 Hb_002616_020 Hb_000352_360--Hb_002616_020 Hb_002869_090 Hb_002869_090 Hb_000352_360--Hb_002869_090 Hb_000352_360--Hb_170077_020 Hb_000352_360--Hb_003849_170 Hb_000327_100 Hb_000327_100 Hb_000352_360--Hb_000327_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.137075 1.60706 3.21507 25.4719 0.0464446 0.0269618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.065807 0.0172598 0.0327523 2.23801 1.38713

CAGE analysis