Hb_019337_020

Information

Type -
Description -
Location Contig19337: 31345-36034
Sequence    

Annotation

kegg
ID tcc:TCM_006029
description K+ uptake permease 11 isoform 1
nr
ID XP_007041056.1
description K+ uptake permease 11 isoform 1 [Theobroma cacao]
swissprot
ID O64769
description Potassium transporter 11 OS=Arabidopsis thaliana GN=POT11 PE=2 SV=1
trembl
ID A0A061E3N7
description Potassium transporter OS=Theobroma cacao GN=TCM_006029 PE=3 SV=1
Gene Ontology
ID GO:0016021
description potassium transporter 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19293: 31436-31688
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019337_020 0.0 - - K+ uptake permease 11 isoform 1 [Theobroma cacao]
2 Hb_001227_080 0.0478641654 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_000358_050 0.0668732517 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
4 Hb_007818_010 0.0715834891 - - PREDICTED: transcriptional corepressor SEUSS-like isoform X2 [Gossypium raimondii]
5 Hb_009296_040 0.0761043397 - - hypothetical protein L484_007435 [Morus notabilis]
6 Hb_002639_080 0.0779164601 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
7 Hb_000388_090 0.0782046807 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
8 Hb_004143_160 0.0792388636 - - SAB, putative [Ricinus communis]
9 Hb_000261_480 0.0806896665 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
10 Hb_135572_010 0.0809365605 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
11 Hb_000028_390 0.0820560023 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
12 Hb_001440_030 0.0832797924 - - PREDICTED: exocyst complex component SEC8 [Jatropha curcas]
13 Hb_004208_050 0.0837856324 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
14 Hb_001417_030 0.0860613669 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
15 Hb_000922_030 0.0860830806 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
16 Hb_003411_040 0.0860837876 - - unnamed protein product [Coffea canephora]
17 Hb_000066_170 0.0883014059 - - PREDICTED: phosphatidylinositol-3-phosphatase myotubularin-1 isoform X2 [Jatropha curcas]
18 Hb_071130_010 0.0896012925 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
19 Hb_000069_120 0.0898334244 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
20 Hb_000809_230 0.0909835393 - - PREDICTED: uncharacterized protein LOC105639681 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_019337_020 Hb_019337_020 Hb_001227_080 Hb_001227_080 Hb_019337_020--Hb_001227_080 Hb_000358_050 Hb_000358_050 Hb_019337_020--Hb_000358_050 Hb_007818_010 Hb_007818_010 Hb_019337_020--Hb_007818_010 Hb_009296_040 Hb_009296_040 Hb_019337_020--Hb_009296_040 Hb_002639_080 Hb_002639_080 Hb_019337_020--Hb_002639_080 Hb_000388_090 Hb_000388_090 Hb_019337_020--Hb_000388_090 Hb_001227_080--Hb_007818_010 Hb_000672_040 Hb_000672_040 Hb_001227_080--Hb_000672_040 Hb_001227_080--Hb_002639_080 Hb_001417_030 Hb_001417_030 Hb_001227_080--Hb_001417_030 Hb_001227_080--Hb_000388_090 Hb_004048_120 Hb_004048_120 Hb_000358_050--Hb_004048_120 Hb_004143_160 Hb_004143_160 Hb_000358_050--Hb_004143_160 Hb_004208_050 Hb_004208_050 Hb_000358_050--Hb_004208_050 Hb_000922_030 Hb_000922_030 Hb_000358_050--Hb_000922_030 Hb_011485_060 Hb_011485_060 Hb_000358_050--Hb_011485_060 Hb_135572_010 Hb_135572_010 Hb_000358_050--Hb_135572_010 Hb_007818_010--Hb_002639_080 Hb_071130_010 Hb_071130_010 Hb_007818_010--Hb_071130_010 Hb_000720_130 Hb_000720_130 Hb_007818_010--Hb_000720_130 Hb_001188_020 Hb_001188_020 Hb_007818_010--Hb_001188_020 Hb_000140_210 Hb_000140_210 Hb_009296_040--Hb_000140_210 Hb_011016_050 Hb_011016_050 Hb_009296_040--Hb_011016_050 Hb_010142_020 Hb_010142_020 Hb_009296_040--Hb_010142_020 Hb_000028_390 Hb_000028_390 Hb_009296_040--Hb_000028_390 Hb_000537_050 Hb_000537_050 Hb_009296_040--Hb_000537_050 Hb_000614_240 Hb_000614_240 Hb_009296_040--Hb_000614_240 Hb_002639_080--Hb_001188_020 Hb_041327_010 Hb_041327_010 Hb_002639_080--Hb_041327_010 Hb_002639_080--Hb_071130_010 Hb_002639_080--Hb_004143_160 Hb_000069_120 Hb_000069_120 Hb_002639_080--Hb_000069_120 Hb_007632_010 Hb_007632_010 Hb_002639_080--Hb_007632_010 Hb_001357_020 Hb_001357_020 Hb_000388_090--Hb_001357_020 Hb_005736_020 Hb_005736_020 Hb_000388_090--Hb_005736_020 Hb_002063_020 Hb_002063_020 Hb_000388_090--Hb_002063_020 Hb_028912_050 Hb_028912_050 Hb_000388_090--Hb_028912_050 Hb_002099_080 Hb_002099_080 Hb_000388_090--Hb_002099_080 Hb_000388_090--Hb_000028_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.35696 4.02639 2.12749 3.40801 2.88134 4.87544
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.09028 3.08834 4.22476 6.31218 6.44456

CAGE analysis