Hb_019392_010

Information

Type -
Description -
Location Contig19392: 3246-26634
Sequence    

Annotation

kegg
ID egr:104453648
description probable S-adenosylmethionine-dependent methyltransferase At5g37990
nr
ID XP_012072505.1
description PREDICTED: LOW QUALITY PROTEIN: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
swissprot
ID Q9LS10
description Probable S-adenosylmethionine-dependent methyltransferase At5g38100 OS=Arabidopsis thaliana GN=At5g38100 PE=2 SV=1
trembl
ID A0A059BFP1
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02088 PE=4 SV=1
Gene Ontology
ID GO:0008168
description probable s-adenosylmethionine-dependent methyltransferase at5g37990

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19360: 3118-4531
cDNA
(Sanger)
(ID:Location)		 024_A05.ab1: 3754-4516 , 029_J08.ab1: 3720-4522 , 034_F01.ab1: 3565-4522 , 043_L01.ab1: 3564-4519 , 047_I01.ab1: 3552-4520

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019392_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
2 Hb_148986_010 0.0326120054 - - unnamed protein product [Vitis vinifera]
3 Hb_000086_710 0.038610766 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
4 Hb_006925_010 0.0390393814 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
5 Hb_001266_110 0.039652465 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003334_020 0.0446993008 - - hypothetical protein CISIN_1g041546mg [Citrus sinensis]
7 Hb_000958_180 0.0495682202 - - hypothetical protein CISIN_1g043061mg, partial [Citrus sinensis]
8 Hb_000329_160 0.0503035647 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
9 Hb_004057_050 0.0503694929 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
10 Hb_058620_050 0.0640066698 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
11 Hb_000684_060 0.0651946086 - - hypothetical protein POPTR_0006s13170g [Populus trichocarpa]
12 Hb_185391_010 0.0657350396 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
13 Hb_058620_040 0.0678984033 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
14 Hb_080238_010 0.0682403016 - - Reticuline oxidase precursor, putative [Ricinus communis]
15 Hb_036291_010 0.0789385451 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
16 Hb_003334_080 0.0843851137 - - Reticuline oxidase precursor, putative [Ricinus communis]
17 Hb_001040_190 0.0845803416 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-2a-like [Jatropha curcas]
18 Hb_109163_010 0.0854981869 - - polyphenol oxidase [Hevea brasiliensis]
19 Hb_009568_010 0.0856219848 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]
20 Hb_005120_010 0.08625869 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_019392_010 Hb_019392_010 Hb_148986_010 Hb_148986_010 Hb_019392_010--Hb_148986_010 Hb_000086_710 Hb_000086_710 Hb_019392_010--Hb_000086_710 Hb_006925_010 Hb_006925_010 Hb_019392_010--Hb_006925_010 Hb_001266_110 Hb_001266_110 Hb_019392_010--Hb_001266_110 Hb_003334_020 Hb_003334_020 Hb_019392_010--Hb_003334_020 Hb_000958_180 Hb_000958_180 Hb_019392_010--Hb_000958_180 Hb_148986_010--Hb_006925_010 Hb_000684_060 Hb_000684_060 Hb_148986_010--Hb_000684_060 Hb_148986_010--Hb_001266_110 Hb_148986_010--Hb_003334_020 Hb_148986_010--Hb_000086_710 Hb_000086_710--Hb_001266_110 Hb_004057_050 Hb_004057_050 Hb_000086_710--Hb_004057_050 Hb_000086_710--Hb_003334_020 Hb_000086_710--Hb_006925_010 Hb_006925_010--Hb_001266_110 Hb_006925_010--Hb_003334_020 Hb_080238_010 Hb_080238_010 Hb_006925_010--Hb_080238_010 Hb_000329_160 Hb_000329_160 Hb_006925_010--Hb_000329_160 Hb_001266_110--Hb_003334_020 Hb_001266_110--Hb_004057_050 Hb_003334_020--Hb_004057_050 Hb_003334_020--Hb_080238_010 Hb_185391_010 Hb_185391_010 Hb_000958_180--Hb_185391_010 Hb_000958_180--Hb_001266_110 Hb_000958_180--Hb_006925_010 Hb_000958_180--Hb_000086_710 Hb_058620_050 Hb_058620_050 Hb_000958_180--Hb_058620_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00785039 0.494897 0.517984 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.026987 35.2074 0

CAGE analysis