Hb_019429_010

Information

Type -
Description -
Location Contig19429: 3623-3817
Sequence    

Annotation

kegg
ID rcu:RCOM_1383280
description hypothetical protein
nr
ID XP_002522120.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S804
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1383280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019429_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_072376_010 0.0050359465 - - -
3 Hb_000963_100 0.0053159136 - - Protein SUA5, putative [Ricinus communis]
4 Hb_052135_040 0.0053775794 - - -
5 Hb_095589_010 0.0056456549 - - Ankyrin repeat family protein, putative [Theobroma cacao]
6 Hb_000473_130 0.0057704121 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
7 Hb_000603_060 0.0057802614 - - putative gag protein [Coffea canephora]
8 Hb_004785_110 0.0058213045 - - -
9 Hb_000266_090 0.0118101986 - - -
10 Hb_001740_020 0.0137393674 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
11 Hb_007966_010 0.0170200583 - - carbohydrate binding protein, putative [Ricinus communis]
12 Hb_086063_030 0.0177366974 - - PREDICTED: pre-mRNA-processing-splicing factor 8-like [Camelina sativa]
13 Hb_173479_010 0.021049091 - - -
14 Hb_011549_020 0.0256488428 - - -
15 Hb_156637_010 0.0267681746 - - PREDICTED: aldose reductase-like [Camelina sativa]
16 Hb_003687_260 0.0333509875 - - PREDICTED: inorganic phosphate transporter 1-4-like [Camelina sativa]
17 Hb_002539_060 0.0343173007 - - -
18 Hb_000815_180 0.0344274019 - - -
19 Hb_049719_010 0.0383593466 - - ATP binding protein, putative [Ricinus communis]
20 Hb_081212_010 0.0456632996 - - -

Gene co-expression network

sample Hb_019429_010 Hb_019429_010 Hb_072376_010 Hb_072376_010 Hb_019429_010--Hb_072376_010 Hb_000963_100 Hb_000963_100 Hb_019429_010--Hb_000963_100 Hb_052135_040 Hb_052135_040 Hb_019429_010--Hb_052135_040 Hb_095589_010 Hb_095589_010 Hb_019429_010--Hb_095589_010 Hb_000473_130 Hb_000473_130 Hb_019429_010--Hb_000473_130 Hb_000603_060 Hb_000603_060 Hb_019429_010--Hb_000603_060 Hb_072376_010--Hb_000963_100 Hb_072376_010--Hb_052135_040 Hb_072376_010--Hb_095589_010 Hb_072376_010--Hb_000473_130 Hb_072376_010--Hb_000603_060 Hb_004785_110 Hb_004785_110 Hb_072376_010--Hb_004785_110 Hb_000963_100--Hb_052135_040 Hb_000963_100--Hb_095589_010 Hb_000963_100--Hb_000473_130 Hb_000963_100--Hb_000603_060 Hb_000963_100--Hb_004785_110 Hb_052135_040--Hb_095589_010 Hb_052135_040--Hb_000473_130 Hb_052135_040--Hb_000603_060 Hb_052135_040--Hb_004785_110 Hb_095589_010--Hb_000473_130 Hb_095589_010--Hb_000603_060 Hb_095589_010--Hb_004785_110 Hb_000473_130--Hb_000603_060 Hb_000473_130--Hb_004785_110 Hb_000603_060--Hb_004785_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 27.445 23.999 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis