Hb_019429_020

Information

Type -
Description -
Location Contig19429: 7058-12469
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q1PEM5
description Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0044464
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019429_020 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_001117_020 0.0195847266 - - hypothetical protein CICLE_v10008579mg [Citrus clementina]
3 Hb_008821_030 0.0451541681 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
4 Hb_004788_030 0.0478406953 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
5 Hb_001398_110 0.0652662416 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
6 Hb_000045_290 0.0665931524 - - -
7 Hb_006083_010 0.0691266539 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
8 Hb_001410_040 0.0703876741 - - Protein ABIL2, putative [Ricinus communis]
9 Hb_009385_010 0.0769893831 - - Cysteine/Histidine-rich C1 domain family protein, putative [Theobroma cacao]
10 Hb_003847_090 0.0781038841 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
11 Hb_000371_030 0.0849927009 - - PREDICTED: LOW QUALITY PROTEIN: anthocyanidin 3-O-glucosyltransferase 5 [Prunus mume]
12 Hb_004241_140 0.0893559867 - - S-locus lectin protein kinase family protein, putative [Theobroma cacao]
13 Hb_007747_070 0.0895152153 - - PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]
14 Hb_023712_020 0.0911553452 transcription factor TF Family: ERF hypothetical protein JCGZ_20669 [Jatropha curcas]
15 Hb_021142_030 0.1022928718 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
16 Hb_000277_030 0.1055223159 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
17 Hb_055877_010 0.1072684389 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
18 Hb_000331_020 0.1075673155 - - cytochrome P450, putative [Ricinus communis]
19 Hb_006197_010 0.1100892816 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
20 Hb_004586_050 0.1153087277 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]

Gene co-expression network

sample Hb_019429_020 Hb_019429_020 Hb_001117_020 Hb_001117_020 Hb_019429_020--Hb_001117_020 Hb_008821_030 Hb_008821_030 Hb_019429_020--Hb_008821_030 Hb_004788_030 Hb_004788_030 Hb_019429_020--Hb_004788_030 Hb_001398_110 Hb_001398_110 Hb_019429_020--Hb_001398_110 Hb_000045_290 Hb_000045_290 Hb_019429_020--Hb_000045_290 Hb_006083_010 Hb_006083_010 Hb_019429_020--Hb_006083_010 Hb_001117_020--Hb_000045_290 Hb_001117_020--Hb_001398_110 Hb_001117_020--Hb_008821_030 Hb_001117_020--Hb_004788_030 Hb_004241_140 Hb_004241_140 Hb_001117_020--Hb_004241_140 Hb_008821_030--Hb_004788_030 Hb_001410_040 Hb_001410_040 Hb_008821_030--Hb_001410_040 Hb_009385_010 Hb_009385_010 Hb_008821_030--Hb_009385_010 Hb_007747_070 Hb_007747_070 Hb_008821_030--Hb_007747_070 Hb_004788_030--Hb_001410_040 Hb_004788_030--Hb_009385_010 Hb_004788_030--Hb_006083_010 Hb_004788_030--Hb_007747_070 Hb_001398_110--Hb_000045_290 Hb_001398_110--Hb_004241_140 Hb_000331_020 Hb_000331_020 Hb_001398_110--Hb_000331_020 Hb_005649_070 Hb_005649_070 Hb_001398_110--Hb_005649_070 Hb_000045_290--Hb_004241_140 Hb_000045_290--Hb_005649_070 Hb_000045_290--Hb_008821_030 Hb_006083_010--Hb_001410_040 Hb_006083_010--Hb_009385_010 Hb_003847_090 Hb_003847_090 Hb_006083_010--Hb_003847_090 Hb_006083_010--Hb_008821_030 Hb_021142_030 Hb_021142_030 Hb_006083_010--Hb_021142_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0257059 0.0862466 0.0441358 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis