Hb_019430_020

Information

Type -
Description -
Location Contig19430: 34603-40900
Sequence    

Annotation

kegg
ID rcu:RCOM_0301280
description hypothetical protein
nr
ID XP_012081844.1
description PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K047
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19376: 33696-34139 , PASA_asmbl_19377: 34278-40896
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019430_020 0.0 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
2 Hb_009767_080 0.0604980206 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
3 Hb_000661_130 0.0637655632 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
4 Hb_001322_130 0.0657180697 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
5 Hb_000665_230 0.0679730588 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
6 Hb_000321_150 0.0712588086 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
7 Hb_002253_080 0.0749785177 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
8 Hb_000046_190 0.0761223071 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
9 Hb_003729_030 0.0768852451 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
10 Hb_000174_290 0.078896677 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
11 Hb_031042_050 0.0795026026 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
12 Hb_004108_100 0.0797727481 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X2 [Jatropha curcas]
13 Hb_000684_250 0.0800155229 - - PREDICTED: uncharacterized protein LOC105642172 [Jatropha curcas]
14 Hb_003203_030 0.0807393748 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
15 Hb_000025_320 0.081111897 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
16 Hb_000960_100 0.0814472587 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
17 Hb_000977_120 0.0818346518 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
18 Hb_005539_090 0.082843411 transcription factor TF Family: PHD PREDICTED: methyl-CpG-binding domain-containing protein 9 isoform X1 [Jatropha curcas]
19 Hb_002174_030 0.0833121558 - - transcription elongation factor s-II, putative [Ricinus communis]
20 Hb_000069_470 0.083366707 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_019430_020 Hb_019430_020 Hb_009767_080 Hb_009767_080 Hb_019430_020--Hb_009767_080 Hb_000661_130 Hb_000661_130 Hb_019430_020--Hb_000661_130 Hb_001322_130 Hb_001322_130 Hb_019430_020--Hb_001322_130 Hb_000665_230 Hb_000665_230 Hb_019430_020--Hb_000665_230 Hb_000321_150 Hb_000321_150 Hb_019430_020--Hb_000321_150 Hb_002253_080 Hb_002253_080 Hb_019430_020--Hb_002253_080 Hb_000890_050 Hb_000890_050 Hb_009767_080--Hb_000890_050 Hb_000684_250 Hb_000684_250 Hb_009767_080--Hb_000684_250 Hb_009898_010 Hb_009898_010 Hb_009767_080--Hb_009898_010 Hb_009767_080--Hb_000321_150 Hb_000069_470 Hb_000069_470 Hb_009767_080--Hb_000069_470 Hb_000661_130--Hb_000321_150 Hb_006117_080 Hb_006117_080 Hb_000661_130--Hb_006117_080 Hb_000661_130--Hb_000069_470 Hb_010712_040 Hb_010712_040 Hb_000661_130--Hb_010712_040 Hb_004483_040 Hb_004483_040 Hb_000661_130--Hb_004483_040 Hb_001322_130--Hb_002253_080 Hb_031042_050 Hb_031042_050 Hb_001322_130--Hb_031042_050 Hb_000866_460 Hb_000866_460 Hb_001322_130--Hb_000866_460 Hb_002267_140 Hb_002267_140 Hb_001322_130--Hb_002267_140 Hb_000243_210 Hb_000243_210 Hb_001322_130--Hb_000243_210 Hb_011689_030 Hb_011689_030 Hb_000665_230--Hb_011689_030 Hb_003805_040 Hb_003805_040 Hb_000665_230--Hb_003805_040 Hb_009486_170 Hb_009486_170 Hb_000665_230--Hb_009486_170 Hb_000176_100 Hb_000176_100 Hb_000665_230--Hb_000176_100 Hb_001133_030 Hb_001133_030 Hb_000665_230--Hb_001133_030 Hb_002007_110 Hb_002007_110 Hb_000665_230--Hb_002007_110 Hb_003729_030 Hb_003729_030 Hb_000321_150--Hb_003729_030 Hb_000321_150--Hb_006117_080 Hb_000321_150--Hb_000069_470 Hb_000977_120 Hb_000977_120 Hb_000321_150--Hb_000977_120 Hb_008253_030 Hb_008253_030 Hb_002253_080--Hb_008253_030 Hb_001767_140 Hb_001767_140 Hb_002253_080--Hb_001767_140 Hb_002253_080--Hb_031042_050 Hb_002253_080--Hb_002267_140 Hb_002615_090 Hb_002615_090 Hb_002253_080--Hb_002615_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.82981 16.8168 6.74708 7.56377 10.295 11.1059
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.34412 3.5811 10.1403 7.78443 13.7395

CAGE analysis