Hb_019516_030

Information

Type -
Description -
Location Contig19516: 16141-18328
Sequence    

Annotation

kegg
ID rcu:RCOM_0632630
description Calcyclin-binding protein, putative
nr
ID XP_002519682.1
description Calcyclin-binding protein, putative [Ricinus communis]
swissprot
ID Q9CXW3
description Calcyclin-binding protein OS=Mus musculus GN=Cacybp PE=1 SV=1
trembl
ID B9S113
description Calcyclin-binding protein, putative OS=Ricinus communis GN=RCOM_0632630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19525: 16209-18643
cDNA
(Sanger)
(ID:Location)		 034_H23.ab1: 16213-18360

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019516_030 0.0 - - Calcyclin-binding protein, putative [Ricinus communis]
2 Hb_001369_370 0.1280343327 - - PREDICTED: 23.6 kDa heat shock protein, mitochondrial [Jatropha curcas]
3 Hb_000454_190 0.1523855739 - - PREDICTED: probable ribosome-binding factor A, chloroplastic [Jatropha curcas]
4 Hb_000062_110 0.1599585284 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
5 Hb_000941_140 0.1607586889 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
6 Hb_011004_020 0.1609963998 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
7 Hb_004635_080 0.1639957025 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_000363_460 0.1702047498 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_004635_130 0.1704737654 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
10 Hb_000883_030 0.1742368815 - - PREDICTED: uncharacterized protein LOC105636683 [Jatropha curcas]
11 Hb_005527_030 0.1767386042 - - PREDICTED: pentatricopeptide repeat-containing protein At3g42630 isoform X1 [Jatropha curcas]
12 Hb_150651_030 0.1790710759 - - PREDICTED: metallophosphoesterase 1-like [Jatropha curcas]
13 Hb_000076_260 0.1820828723 - - hypothetical protein GUITHDRAFT_149979 [Guillardia theta CCMP2712]
14 Hb_000334_170 0.1847877726 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP42 isoform X1 [Jatropha curcas]
15 Hb_000958_070 0.1850060345 - - hypothetical protein PRUPE_ppa007681mg [Prunus persica]
16 Hb_011344_020 0.1862184622 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
17 Hb_000215_220 0.1866857404 - - PREDICTED: derlin-1 isoform X1 [Jatropha curcas]
18 Hb_000260_560 0.1870515727 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Jatropha curcas]
19 Hb_006052_030 0.1871450608 - - PREDICTED: dnaJ protein ERDJ3A [Jatropha curcas]
20 Hb_004032_410 0.1871976944 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_019516_030 Hb_019516_030 Hb_001369_370 Hb_001369_370 Hb_019516_030--Hb_001369_370 Hb_000454_190 Hb_000454_190 Hb_019516_030--Hb_000454_190 Hb_000062_110 Hb_000062_110 Hb_019516_030--Hb_000062_110 Hb_000941_140 Hb_000941_140 Hb_019516_030--Hb_000941_140 Hb_011004_020 Hb_011004_020 Hb_019516_030--Hb_011004_020 Hb_004635_080 Hb_004635_080 Hb_019516_030--Hb_004635_080 Hb_001369_370--Hb_000062_110 Hb_001369_370--Hb_011004_020 Hb_001369_370--Hb_000941_140 Hb_001235_100 Hb_001235_100 Hb_001369_370--Hb_001235_100 Hb_001369_370--Hb_000454_190 Hb_005527_030 Hb_005527_030 Hb_000454_190--Hb_005527_030 Hb_000958_070 Hb_000958_070 Hb_000454_190--Hb_000958_070 Hb_011344_020 Hb_011344_020 Hb_000454_190--Hb_011344_020 Hb_000343_110 Hb_000343_110 Hb_000454_190--Hb_000343_110 Hb_000982_050 Hb_000982_050 Hb_000454_190--Hb_000982_050 Hb_006445_010 Hb_006445_010 Hb_000454_190--Hb_006445_010 Hb_001766_040 Hb_001766_040 Hb_000062_110--Hb_001766_040 Hb_000062_110--Hb_000941_140 Hb_006618_040 Hb_006618_040 Hb_000062_110--Hb_006618_040 Hb_000062_110--Hb_011344_020 Hb_004296_010 Hb_004296_010 Hb_000941_140--Hb_004296_010 Hb_000941_140--Hb_006618_040 Hb_000941_140--Hb_000454_190 Hb_001232_100 Hb_001232_100 Hb_000941_140--Hb_001232_100 Hb_001322_170 Hb_001322_170 Hb_011004_020--Hb_001322_170 Hb_000028_040 Hb_000028_040 Hb_011004_020--Hb_000028_040 Hb_003656_110 Hb_003656_110 Hb_011004_020--Hb_003656_110 Hb_000883_030 Hb_000883_030 Hb_011004_020--Hb_000883_030 Hb_000422_140 Hb_000422_140 Hb_004635_080--Hb_000422_140 Hb_028707_090 Hb_028707_090 Hb_004635_080--Hb_028707_090 Hb_000365_140 Hb_000365_140 Hb_004635_080--Hb_000365_140 Hb_028390_010 Hb_028390_010 Hb_004635_080--Hb_028390_010 Hb_008595_010 Hb_008595_010 Hb_004635_080--Hb_008595_010 Hb_002477_130 Hb_002477_130 Hb_004635_080--Hb_002477_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
375.842 314.914 455.625 277.017 1593.35 448.977
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
176.815 327.926 268.188 139.521 863.771

CAGE analysis