Hb_019516_040

Information

Type desease resistance
Description Gene Name: AAA
Location Contig19516: 19263-25471
Sequence    

Annotation

kegg
ID rcu:RCOM_0632640
description Katanin p60 ATPase-containing subunit, putative (EC:3.6.4.3)
nr
ID XP_002519683.1
description Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
swissprot
ID A0JMA9
description Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis GN=katnal2 PE=2 SV=1
trembl
ID B9S114
description Katanin p60 ATPase-containing subunit, putative OS=Ricinus communis GN=RCOM_0632640 PE=4 SV=1
Gene Ontology
ID GO:0005524
description katanin p60 atpase-containing subunit a-like 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19527: 25232-25417
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019516_040 0.0 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
2 Hb_000997_260 0.0807854889 - - PREDICTED: rRNA-processing protein EFG1 isoform X1 [Jatropha curcas]
3 Hb_000510_100 0.118207422 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
4 Hb_000762_020 0.1207200161 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
5 Hb_003745_010 0.1329308766 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
6 Hb_001140_160 0.1363633517 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
7 Hb_000920_140 0.1370822261 - - annexin [Manihot esculenta]
8 Hb_000130_390 0.1376283016 - - PREDICTED: glutamate receptor 2.8-like [Pyrus x bretschneideri]
9 Hb_000613_200 0.1386845441 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase acetyl-CoA C-acetyltransferase [Hevea brasiliensis]
10 Hb_000957_040 0.1423928926 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
11 Hb_003018_180 0.1466915137 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
12 Hb_001780_060 0.1484415749 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
13 Hb_002518_250 0.1491427562 - - conserved hypothetical protein 10 [Hevea brasiliensis]
14 Hb_001631_070 0.150573019 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
15 Hb_002078_430 0.1517346947 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
16 Hb_000270_400 0.1525090485 - - lipase, putative [Ricinus communis]
17 Hb_000184_040 0.1549921215 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]
18 Hb_010578_090 0.1553533684 - - HEV2.1 [Hevea brasiliensis]
19 Hb_000753_260 0.1555032374 transcription factor TF Family: MIKC MADS-box transcription factor 3 [Hevea brasiliensis]
20 Hb_004738_090 0.1574732022 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_019516_040 Hb_019516_040 Hb_000997_260 Hb_000997_260 Hb_019516_040--Hb_000997_260 Hb_000510_100 Hb_000510_100 Hb_019516_040--Hb_000510_100 Hb_000762_020 Hb_000762_020 Hb_019516_040--Hb_000762_020 Hb_003745_010 Hb_003745_010 Hb_019516_040--Hb_003745_010 Hb_001140_160 Hb_001140_160 Hb_019516_040--Hb_001140_160 Hb_000920_140 Hb_000920_140 Hb_019516_040--Hb_000920_140 Hb_003636_090 Hb_003636_090 Hb_000997_260--Hb_003636_090 Hb_002518_250 Hb_002518_250 Hb_000997_260--Hb_002518_250 Hb_000997_260--Hb_001140_160 Hb_000933_140 Hb_000933_140 Hb_000997_260--Hb_000933_140 Hb_000085_340 Hb_000085_340 Hb_000997_260--Hb_000085_340 Hb_000184_040 Hb_000184_040 Hb_000510_100--Hb_000184_040 Hb_000510_100--Hb_000762_020 Hb_000282_060 Hb_000282_060 Hb_000510_100--Hb_000282_060 Hb_004072_010 Hb_004072_010 Hb_000510_100--Hb_004072_010 Hb_000567_200 Hb_000567_200 Hb_000510_100--Hb_000567_200 Hb_000957_040 Hb_000957_040 Hb_000762_020--Hb_000957_040 Hb_000762_020--Hb_001140_160 Hb_000762_020--Hb_000184_040 Hb_006120_200 Hb_006120_200 Hb_000762_020--Hb_006120_200 Hb_012347_010 Hb_012347_010 Hb_000762_020--Hb_012347_010 Hb_001017_090 Hb_001017_090 Hb_000762_020--Hb_001017_090 Hb_001631_070 Hb_001631_070 Hb_003745_010--Hb_001631_070 Hb_000130_390 Hb_000130_390 Hb_003745_010--Hb_000130_390 Hb_003745_010--Hb_012347_010 Hb_003018_180 Hb_003018_180 Hb_003745_010--Hb_003018_180 Hb_027751_040 Hb_027751_040 Hb_003745_010--Hb_027751_040 Hb_001140_160--Hb_000957_040 Hb_004738_090 Hb_004738_090 Hb_001140_160--Hb_004738_090 Hb_001140_160--Hb_003018_180 Hb_001140_160--Hb_012347_010 Hb_000500_310 Hb_000500_310 Hb_001140_160--Hb_000500_310 Hb_023988_020 Hb_023988_020 Hb_000920_140--Hb_023988_020 Hb_000376_110 Hb_000376_110 Hb_000920_140--Hb_000376_110 Hb_004032_440 Hb_004032_440 Hb_000920_140--Hb_004032_440 Hb_001696_030 Hb_001696_030 Hb_000920_140--Hb_001696_030 Hb_000920_140--Hb_000762_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
87.3966 4.65576 3.12545 2.6862 37.0933 55.2242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
91.0576 22.5555 24.3005 5.22008 1.37396

CAGE analysis