Hb_019516_060

Information

Type -
Description -
Location Contig19516: 56569-58209
Sequence    

Annotation

kegg
ID rcu:RCOM_0632670
description hypothetical protein
nr
ID XP_012072487.1
description PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L0F5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04618 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19528: 56711-57740 , PASA_asmbl_19529: 57921-58136
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019516_060 0.0 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
2 Hb_000246_130 0.0944647736 - - tubulin alpha chain, putative [Ricinus communis]
3 Hb_000030_130 0.1002615807 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
4 Hb_000820_110 0.1040963776 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
5 Hb_003462_040 0.1145425748 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
6 Hb_012395_110 0.1153467132 - - PREDICTED: peroxygenase [Jatropha curcas]
7 Hb_006750_010 0.119762262 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
8 Hb_003086_030 0.1205848718 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
9 Hb_001789_100 0.1210906905 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001102_160 0.1217469924 - - PREDICTED: galacturonokinase [Jatropha curcas]
11 Hb_084147_010 0.1246239422 - - amino acid transporter, putative [Ricinus communis]
12 Hb_001369_010 0.1275041576 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
13 Hb_002759_030 0.136297077 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
14 Hb_000069_560 0.1364749508 - - hypothetical protein POPTR_0002s16980g [Populus trichocarpa]
15 Hb_000108_180 0.1377915399 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
16 Hb_001775_080 0.1379206902 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
17 Hb_006569_080 0.1380235542 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_024559 [Vitis vinifera]
18 Hb_019516_070 0.1384721886 - - PREDICTED: uncharacterized protein LOC105634258 [Jatropha curcas]
19 Hb_000922_400 0.1385572853 - - PREDICTED: uncharacterized protein LOC105640363 [Jatropha curcas]
20 Hb_000297_140 0.1399179594 - - hypothetical protein RCOM_0293450 [Ricinus communis]

Gene co-expression network

sample Hb_019516_060 Hb_019516_060 Hb_000246_130 Hb_000246_130 Hb_019516_060--Hb_000246_130 Hb_000030_130 Hb_000030_130 Hb_019516_060--Hb_000030_130 Hb_000820_110 Hb_000820_110 Hb_019516_060--Hb_000820_110 Hb_003462_040 Hb_003462_040 Hb_019516_060--Hb_003462_040 Hb_012395_110 Hb_012395_110 Hb_019516_060--Hb_012395_110 Hb_006750_010 Hb_006750_010 Hb_019516_060--Hb_006750_010 Hb_000246_130--Hb_000030_130 Hb_001102_160 Hb_001102_160 Hb_000246_130--Hb_001102_160 Hb_030565_100 Hb_030565_100 Hb_000246_130--Hb_030565_100 Hb_002316_080 Hb_002316_080 Hb_000246_130--Hb_002316_080 Hb_084147_010 Hb_084147_010 Hb_000246_130--Hb_084147_010 Hb_174541_030 Hb_174541_030 Hb_000030_130--Hb_174541_030 Hb_003086_030 Hb_003086_030 Hb_000030_130--Hb_003086_030 Hb_000928_200 Hb_000928_200 Hb_000030_130--Hb_000928_200 Hb_000030_130--Hb_030565_100 Hb_000297_140 Hb_000297_140 Hb_000820_110--Hb_000297_140 Hb_000193_210 Hb_000193_210 Hb_000820_110--Hb_000193_210 Hb_019516_070 Hb_019516_070 Hb_000820_110--Hb_019516_070 Hb_000820_110--Hb_006750_010 Hb_000077_100 Hb_000077_100 Hb_000820_110--Hb_000077_100 Hb_001369_010 Hb_001369_010 Hb_003462_040--Hb_001369_010 Hb_003462_040--Hb_006750_010 Hb_003006_090 Hb_003006_090 Hb_003462_040--Hb_003006_090 Hb_003226_250 Hb_003226_250 Hb_003462_040--Hb_003226_250 Hb_001195_660 Hb_001195_660 Hb_003462_040--Hb_001195_660 Hb_004007_070 Hb_004007_070 Hb_012395_110--Hb_004007_070 Hb_000086_090 Hb_000086_090 Hb_012395_110--Hb_000086_090 Hb_004241_110 Hb_004241_110 Hb_012395_110--Hb_004241_110 Hb_012395_110--Hb_001102_160 Hb_012395_110--Hb_084147_010 Hb_028396_020 Hb_028396_020 Hb_006750_010--Hb_028396_020 Hb_006750_010--Hb_001369_010 Hb_001195_380 Hb_001195_380 Hb_006750_010--Hb_001195_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.631795 1.74602 3.61131 13.856 0.290548 0.18356
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.579074 0.621036 0.608404 0.533197 7.01433

CAGE analysis