Hb_019516_080

Information

Type -
Description -
Location Contig19516: 62648-65670
Sequence    

Annotation

kegg
ID rcu:RCOM_0632780
description hypothetical protein
nr
ID XP_002519687.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S118
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0632780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19530: 63410-65349 , PASA_asmbl_19531: 62828-63593 , PASA_asmbl_19532: 63008-63370 , PASA_asmbl_19533: 64554-64884
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019516_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_027073_050 0.1124897398 - - PREDICTED: uncharacterized protein LOC105635813 isoform X2 [Jatropha curcas]
3 Hb_000103_320 0.1140668233 - - Stem-specific protein TSJT1, putative [Ricinus communis]
4 Hb_001439_200 0.1145929773 - - Transmembrane protein Tmp21 precursor, putative [Ricinus communis]
5 Hb_003687_150 0.1159629464 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
6 Hb_000046_100 0.1169272134 - - NADH dehydrogenase, putative [Ricinus communis]
7 Hb_000300_220 0.1175342958 - - PREDICTED: uncharacterized protein LOC105632569 [Jatropha curcas]
8 Hb_005433_040 0.1178838381 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
9 Hb_000243_080 0.1186434729 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
10 Hb_000140_050 0.1189532916 - - PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial [Jatropha curcas]
11 Hb_007904_260 0.1196660492 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]
12 Hb_001545_100 0.123430716 - - PREDICTED: probable F-actin-capping protein subunit beta [Vitis vinifera]
13 Hb_002221_070 0.1246555623 - - beta-glucanase, putative [Ricinus communis]
14 Hb_004225_080 0.1287720468 - - -
15 Hb_000302_220 0.1297969597 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
16 Hb_000069_550 0.1305439926 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
17 Hb_033594_150 0.1305914984 - - unknown [Lotus japonicus]
18 Hb_000336_240 0.131884465 transcription factor TF Family: mTERF LOC100285792 [Zea mays]
19 Hb_021596_090 0.1320862523 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Jatropha curcas]
20 Hb_068056_030 0.1329339248 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]

Gene co-expression network

sample Hb_019516_080 Hb_019516_080 Hb_027073_050 Hb_027073_050 Hb_019516_080--Hb_027073_050 Hb_000103_320 Hb_000103_320 Hb_019516_080--Hb_000103_320 Hb_001439_200 Hb_001439_200 Hb_019516_080--Hb_001439_200 Hb_003687_150 Hb_003687_150 Hb_019516_080--Hb_003687_150 Hb_000046_100 Hb_000046_100 Hb_019516_080--Hb_000046_100 Hb_000300_220 Hb_000300_220 Hb_019516_080--Hb_000300_220 Hb_001461_010 Hb_001461_010 Hb_027073_050--Hb_001461_010 Hb_006569_100 Hb_006569_100 Hb_027073_050--Hb_006569_100 Hb_002918_290 Hb_002918_290 Hb_027073_050--Hb_002918_290 Hb_001904_090 Hb_001904_090 Hb_027073_050--Hb_001904_090 Hb_001191_090 Hb_001191_090 Hb_027073_050--Hb_001191_090 Hb_017413_010 Hb_017413_010 Hb_027073_050--Hb_017413_010 Hb_000638_250 Hb_000638_250 Hb_000103_320--Hb_000638_250 Hb_006831_120 Hb_006831_120 Hb_000103_320--Hb_006831_120 Hb_003581_150 Hb_003581_150 Hb_000103_320--Hb_003581_150 Hb_152784_010 Hb_152784_010 Hb_000103_320--Hb_152784_010 Hb_001318_250 Hb_001318_250 Hb_000103_320--Hb_001318_250 Hb_007441_330 Hb_007441_330 Hb_000103_320--Hb_007441_330 Hb_002221_070 Hb_002221_070 Hb_001439_200--Hb_002221_070 Hb_000161_060 Hb_000161_060 Hb_001439_200--Hb_000161_060 Hb_006846_060 Hb_006846_060 Hb_001439_200--Hb_006846_060 Hb_000046_320 Hb_000046_320 Hb_001439_200--Hb_000046_320 Hb_007904_260 Hb_007904_260 Hb_001439_200--Hb_007904_260 Hb_003687_150--Hb_027073_050 Hb_008544_010 Hb_008544_010 Hb_003687_150--Hb_008544_010 Hb_002016_100 Hb_002016_100 Hb_003687_150--Hb_002016_100 Hb_162275_030 Hb_162275_030 Hb_003687_150--Hb_162275_030 Hb_001080_280 Hb_001080_280 Hb_003687_150--Hb_001080_280 Hb_003687_150--Hb_001904_090 Hb_021596_090 Hb_021596_090 Hb_000046_100--Hb_021596_090 Hb_000046_100--Hb_000103_320 Hb_007044_120 Hb_007044_120 Hb_000046_100--Hb_007044_120 Hb_000046_100--Hb_006831_120 Hb_001218_040 Hb_001218_040 Hb_000046_100--Hb_001218_040 Hb_028872_080 Hb_028872_080 Hb_000046_100--Hb_028872_080 Hb_001008_090 Hb_001008_090 Hb_000300_220--Hb_001008_090 Hb_000322_140 Hb_000322_140 Hb_000300_220--Hb_000322_140 Hb_011537_110 Hb_011537_110 Hb_000300_220--Hb_011537_110 Hb_068056_030 Hb_068056_030 Hb_000300_220--Hb_068056_030 Hb_011457_090 Hb_011457_090 Hb_000300_220--Hb_011457_090 Hb_183961_010 Hb_183961_010 Hb_000300_220--Hb_183961_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.21763 0.456149 4.54761 8.70147 3.58363 5.02743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8376 12.5679 14.2437 3.65452 5.22404

CAGE analysis