Hb_019516_100

Information

Type -
Description -
Location Contig19516: 70768-74029
Sequence    

Annotation

kegg
ID rcu:RCOM_0632900
description 40S ribosomal protein S14, putative
nr
ID XP_002519689.1
description 40S ribosomal protein S14, putative [Ricinus communis]
swissprot
ID P19951
description 40S ribosomal protein S14 OS=Zea mays PE=3 SV=1
trembl
ID B9S120
description 40S ribosomal protein S14, putative OS=Ricinus communis GN=RCOM_0632900 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19535: 70772-73884
cDNA
(Sanger)
(ID:Location)		 019_N20.ab1: 70824-73862 , 029_G01.ab1: 70926-73884 , 031_J15.ab1: 70818-73882

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019516_100 0.0 - - 40S ribosomal protein S14, putative [Ricinus communis]
2 Hb_000042_260 0.0494829816 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
3 Hb_002588_010 0.065831915 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
4 Hb_001158_230 0.0685679148 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
5 Hb_000062_390 0.0743145015 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
6 Hb_172221_010 0.0775109848 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
7 Hb_009384_020 0.0784562241 - - hypothetical protein JCGZ_24168 [Jatropha curcas]
8 Hb_012753_230 0.0796945224 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
9 Hb_026398_010 0.0813940925 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
10 Hb_002909_130 0.084819058 - - Uncharacterized protein isoform 1 [Theobroma cacao]
11 Hb_008948_050 0.0853386093 - - hypothetical protein JCGZ_13339 [Jatropha curcas]
12 Hb_007944_040 0.0859331138 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
13 Hb_001221_310 0.0875641883 - - sec61 gamma subunit, putative [Ricinus communis]
14 Hb_000329_020 0.0877624667 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
15 Hb_000172_420 0.0879762687 - - 60S ribosomal protein L30, putative [Ricinus communis]
16 Hb_000093_110 0.088616326 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
17 Hb_000735_040 0.0891774821 - - 60S ribosomal protein L32A [Hevea brasiliensis]
18 Hb_174865_010 0.0909858143 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
19 Hb_000617_090 0.0910108131 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
20 Hb_000645_140 0.0921670651 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera]

Gene co-expression network

sample Hb_019516_100 Hb_019516_100 Hb_000042_260 Hb_000042_260 Hb_019516_100--Hb_000042_260 Hb_002588_010 Hb_002588_010 Hb_019516_100--Hb_002588_010 Hb_001158_230 Hb_001158_230 Hb_019516_100--Hb_001158_230 Hb_000062_390 Hb_000062_390 Hb_019516_100--Hb_000062_390 Hb_172221_010 Hb_172221_010 Hb_019516_100--Hb_172221_010 Hb_009384_020 Hb_009384_020 Hb_019516_100--Hb_009384_020 Hb_000042_260--Hb_172221_010 Hb_000042_260--Hb_002588_010 Hb_002909_130 Hb_002909_130 Hb_000042_260--Hb_002909_130 Hb_000329_020 Hb_000329_020 Hb_000042_260--Hb_000329_020 Hb_026398_010 Hb_026398_010 Hb_000042_260--Hb_026398_010 Hb_011311_010 Hb_011311_010 Hb_002588_010--Hb_011311_010 Hb_000093_110 Hb_000093_110 Hb_002588_010--Hb_000093_110 Hb_007944_040 Hb_007944_040 Hb_002588_010--Hb_007944_040 Hb_000111_340 Hb_000111_340 Hb_002588_010--Hb_000111_340 Hb_002687_170 Hb_002687_170 Hb_001158_230--Hb_002687_170 Hb_000933_160 Hb_000933_160 Hb_001158_230--Hb_000933_160 Hb_076626_010 Hb_076626_010 Hb_001158_230--Hb_076626_010 Hb_001158_230--Hb_007944_040 Hb_005181_030 Hb_005181_030 Hb_001158_230--Hb_005181_030 Hb_001634_040 Hb_001634_040 Hb_000062_390--Hb_001634_040 Hb_000062_390--Hb_002588_010 Hb_001155_040 Hb_001155_040 Hb_000062_390--Hb_001155_040 Hb_000062_390--Hb_000093_110 Hb_007304_070 Hb_007304_070 Hb_000062_390--Hb_007304_070 Hb_172221_010--Hb_000329_020 Hb_172221_010--Hb_026398_010 Hb_172221_010--Hb_002909_130 Hb_012395_130 Hb_012395_130 Hb_172221_010--Hb_012395_130 Hb_172221_010--Hb_002588_010 Hb_000159_070 Hb_000159_070 Hb_009384_020--Hb_000159_070 Hb_009384_020--Hb_007944_040 Hb_009384_020--Hb_001158_230 Hb_012753_230 Hb_012753_230 Hb_009384_020--Hb_012753_230 Hb_009384_020--Hb_000042_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
121.6 27.8883 103.373 94.6087 97.3467 106.594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
289.449 633.833 145.154 98.5038 62.4212

CAGE analysis