Hb_019592_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig19592: 3663-4903
Sequence    

Annotation

kegg
ID pxb:103928637
description TMV resistance protein N-like
nr
ID XP_009335990.1
description PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
swissprot
ID P0DKH6
description Disease resistance protein RPS6 OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1
trembl
ID X2J6I2
description NBS20 OS=Fragaria ananassa PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019592_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
2 Hb_007749_010 0.2179320067 - - -
3 Hb_000684_130 0.2320808439 - - -
4 Hb_004055_110 0.24670985 - - PREDICTED: uncharacterized protein LOC105631442 isoform X1 [Jatropha curcas]
5 Hb_000424_080 0.2592958091 - - PREDICTED: endoglucanase 16 [Jatropha curcas]
6 Hb_000098_020 0.2641118243 transcription factor TF Family: GRAS GRAS family transcription factor family protein [Theobroma cacao]
7 Hb_000155_060 0.265695109 - - ATP binding protein, putative [Ricinus communis]
8 Hb_001001_050 0.2803394384 - - CXE protein [Hevea brasiliensis]
9 Hb_000516_040 0.2823505695 - - PREDICTED: uncharacterized protein LOC105649502 isoform X2 [Jatropha curcas]
10 Hb_005843_160 0.2882359229 - - PREDICTED: uncharacterized protein LOC105112024 [Populus euphratica]
11 Hb_002570_010 0.2933721883 - - hypothetical protein JCGZ_25329 [Jatropha curcas]
12 Hb_001367_010 0.2936002869 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
13 Hb_133748_010 0.2944647003 - - -
14 Hb_002232_300 0.2975823516 - - Squalene monooxygenase, putative [Ricinus communis]
15 Hb_007157_060 0.2991724193 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
16 Hb_022174_010 0.3019982498 - - elicitor-responsive protein [Hevea brasiliensis]
17 Hb_186857_010 0.3031487697 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
18 Hb_000258_290 0.3036740378 transcription factor TF Family: TCP PREDICTED: transcription factor TCP15 [Jatropha curcas]
19 Hb_001097_060 0.3046338313 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 8 [Jatropha curcas]
20 Hb_003872_010 0.3072520634 - - hypothetical protein PRUPE_ppa013215mg [Prunus persica]

Gene co-expression network

sample Hb_019592_010 Hb_019592_010 Hb_007749_010 Hb_007749_010 Hb_019592_010--Hb_007749_010 Hb_000684_130 Hb_000684_130 Hb_019592_010--Hb_000684_130 Hb_004055_110 Hb_004055_110 Hb_019592_010--Hb_004055_110 Hb_000424_080 Hb_000424_080 Hb_019592_010--Hb_000424_080 Hb_000098_020 Hb_000098_020 Hb_019592_010--Hb_000098_020 Hb_000155_060 Hb_000155_060 Hb_019592_010--Hb_000155_060 Hb_007157_060 Hb_007157_060 Hb_007749_010--Hb_007157_060 Hb_000818_100 Hb_000818_100 Hb_007749_010--Hb_000818_100 Hb_065841_010 Hb_065841_010 Hb_007749_010--Hb_065841_010 Hb_005843_160 Hb_005843_160 Hb_007749_010--Hb_005843_160 Hb_000091_060 Hb_000091_060 Hb_007749_010--Hb_000091_060 Hb_000181_290 Hb_000181_290 Hb_007749_010--Hb_000181_290 Hb_013399_080 Hb_013399_080 Hb_000684_130--Hb_013399_080 Hb_000684_130--Hb_005843_160 Hb_002863_090 Hb_002863_090 Hb_000684_130--Hb_002863_090 Hb_003872_010 Hb_003872_010 Hb_000684_130--Hb_003872_010 Hb_097646_010 Hb_097646_010 Hb_000684_130--Hb_097646_010 Hb_007603_020 Hb_007603_020 Hb_004055_110--Hb_007603_020 Hb_050686_010 Hb_050686_010 Hb_004055_110--Hb_050686_010 Hb_001097_060 Hb_001097_060 Hb_004055_110--Hb_001097_060 Hb_004055_110--Hb_000684_130 Hb_188411_010 Hb_188411_010 Hb_004055_110--Hb_188411_010 Hb_001001_050 Hb_001001_050 Hb_000424_080--Hb_001001_050 Hb_145655_010 Hb_145655_010 Hb_000424_080--Hb_145655_010 Hb_022174_010 Hb_022174_010 Hb_000424_080--Hb_022174_010 Hb_002235_270 Hb_002235_270 Hb_000424_080--Hb_002235_270 Hb_000640_140 Hb_000640_140 Hb_000424_080--Hb_000640_140 Hb_000979_010 Hb_000979_010 Hb_000424_080--Hb_000979_010 Hb_010560_060 Hb_010560_060 Hb_000098_020--Hb_010560_060 Hb_002111_060 Hb_002111_060 Hb_000098_020--Hb_002111_060 Hb_000157_200 Hb_000157_200 Hb_000098_020--Hb_000157_200 Hb_000516_040 Hb_000516_040 Hb_000098_020--Hb_000516_040 Hb_078477_050 Hb_078477_050 Hb_000098_020--Hb_078477_050 Hb_000258_150 Hb_000258_150 Hb_000098_020--Hb_000258_150 Hb_000155_060--Hb_000258_150 Hb_004449_230 Hb_004449_230 Hb_000155_060--Hb_004449_230 Hb_000155_060--Hb_001001_050 Hb_000964_100 Hb_000964_100 Hb_000155_060--Hb_000964_100 Hb_000155_060--Hb_022174_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.5606 0.986319 0.814726 3.79623 2.00575 0.296325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.922307 0.265732 0.672646

CAGE analysis