Hb_019613_010

Information

Type -
Description -
Location Contig19613: 21608-24059
Sequence    

Annotation

kegg
ID rcu:RCOM_1410170
description ubiquitin-protein ligase, putative
nr
ID XP_002523621.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q9FH99
description F-box protein At5g67140 OS=Arabidopsis thaliana GN=At5g67140 PE=2 SV=1
trembl
ID B9SCA2
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1410170 PE=4 SV=1
Gene Ontology
ID GO:0016874
description f-box protein at5g67140

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19672: 22914-23983
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019613_010 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_001269_070 0.1471332019 - - double-stranded RNA binding protein, putative [Ricinus communis]
3 Hb_000329_580 0.1510682783 - - malate dehydrogenase, putative [Ricinus communis]
4 Hb_011053_020 0.1618329572 - - lipoic acid synthetase, putative [Ricinus communis]
5 Hb_001294_030 0.1622943131 - - PREDICTED: uncharacterized protein LOC105644307 [Jatropha curcas]
6 Hb_000473_060 0.1685134815 - - PREDICTED: psbP domain-containing protein 2, chloroplastic [Jatropha curcas]
7 Hb_031330_020 0.1743773997 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
8 Hb_002968_050 0.1763744635 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
9 Hb_000445_120 0.1777968144 - - ATP binding protein, putative [Ricinus communis]
10 Hb_001213_110 0.1786435254 - - SOUL heme-binding family protein [Populus trichocarpa]
11 Hb_134813_010 0.1788864066 - - aldo/keto reductase, putative [Ricinus communis]
12 Hb_004024_020 0.1844460337 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_183963_010 0.1895446986 - - core region of GTP cyclohydrolase I family protein [Populus trichocarpa]
14 Hb_002527_040 0.1896320132 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
15 Hb_000395_010 0.1897565967 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
16 Hb_003935_080 0.1909590563 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
17 Hb_000805_010 0.1942255228 - - PREDICTED: uncharacterized protein LOC105629931 [Jatropha curcas]
18 Hb_001621_060 0.1947086786 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
19 Hb_004109_160 0.1950560361 - - PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic [Jatropha curcas]
20 Hb_000438_120 0.1964279492 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_019613_010 Hb_019613_010 Hb_001269_070 Hb_001269_070 Hb_019613_010--Hb_001269_070 Hb_000329_580 Hb_000329_580 Hb_019613_010--Hb_000329_580 Hb_011053_020 Hb_011053_020 Hb_019613_010--Hb_011053_020 Hb_001294_030 Hb_001294_030 Hb_019613_010--Hb_001294_030 Hb_000473_060 Hb_000473_060 Hb_019613_010--Hb_000473_060 Hb_031330_020 Hb_031330_020 Hb_019613_010--Hb_031330_020 Hb_008179_010 Hb_008179_010 Hb_001269_070--Hb_008179_010 Hb_003935_080 Hb_003935_080 Hb_001269_070--Hb_003935_080 Hb_000032_140 Hb_000032_140 Hb_001269_070--Hb_000032_140 Hb_000395_010 Hb_000395_010 Hb_001269_070--Hb_000395_010 Hb_003226_200 Hb_003226_200 Hb_001269_070--Hb_003226_200 Hb_002486_020 Hb_002486_020 Hb_001269_070--Hb_002486_020 Hb_003261_010 Hb_003261_010 Hb_000329_580--Hb_003261_010 Hb_002968_050 Hb_002968_050 Hb_000329_580--Hb_002968_050 Hb_001213_110 Hb_001213_110 Hb_000329_580--Hb_001213_110 Hb_000200_360 Hb_000200_360 Hb_000329_580--Hb_000200_360 Hb_000329_580--Hb_011053_020 Hb_183963_010 Hb_183963_010 Hb_011053_020--Hb_183963_010 Hb_007002_010 Hb_007002_010 Hb_011053_020--Hb_007002_010 Hb_000012_010 Hb_000012_010 Hb_011053_020--Hb_000012_010 Hb_000023_210 Hb_000023_210 Hb_011053_020--Hb_000023_210 Hb_000866_050 Hb_000866_050 Hb_011053_020--Hb_000866_050 Hb_000189_520 Hb_000189_520 Hb_011053_020--Hb_000189_520 Hb_000152_480 Hb_000152_480 Hb_001294_030--Hb_000152_480 Hb_001755_030 Hb_001755_030 Hb_001294_030--Hb_001755_030 Hb_001294_030--Hb_003935_080 Hb_001621_060 Hb_001621_060 Hb_001294_030--Hb_001621_060 Hb_004109_160 Hb_004109_160 Hb_001294_030--Hb_004109_160 Hb_001792_030 Hb_001792_030 Hb_001294_030--Hb_001792_030 Hb_000473_060--Hb_004109_160 Hb_000473_060--Hb_001621_060 Hb_000473_060--Hb_011053_020 Hb_001369_700 Hb_001369_700 Hb_000473_060--Hb_001369_700 Hb_000473_060--Hb_000189_520 Hb_002078_300 Hb_002078_300 Hb_000473_060--Hb_002078_300 Hb_000300_680 Hb_000300_680 Hb_031330_020--Hb_000300_680 Hb_001916_150 Hb_001916_150 Hb_031330_020--Hb_001916_150 Hb_003778_020 Hb_003778_020 Hb_031330_020--Hb_003778_020 Hb_000975_050 Hb_000975_050 Hb_031330_020--Hb_000975_050 Hb_134813_010 Hb_134813_010 Hb_031330_020--Hb_134813_010 Hb_031330_020--Hb_011053_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.309637 1.38164 6.09503 15.0219 0.096482 0.288424
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.99494 6.54017 2.43179 2.64051 32.7467

CAGE analysis