Hb_019617_010

Information

Type -
Description -
Location Contig19617: 1570-6343
Sequence    

Annotation

kegg
ID egr:104417177
description uncharacterized LOC104417177
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019617_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_155720_010 0.2069775649 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
3 Hb_032634_010 0.2845622703 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
4 Hb_005822_030 0.2889128671 - - -
5 Hb_003605_010 0.2904078241 - - -
6 Hb_173121_010 0.2980647844 - - -
7 Hb_000018_050 0.3077347953 - - PREDICTED: uncharacterized protein LOC104899363 [Beta vulgaris subsp. vulgaris]
8 Hb_114988_010 0.3494329558 - - -
9 Hb_007904_010 0.3725546219 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
10 Hb_004696_050 0.3787587186 - - -
11 Hb_002652_010 0.3791909361 - - -
12 Hb_003927_060 0.3799481395 - - hypothetical protein JCGZ_05636 [Jatropha curcas]
13 Hb_006212_030 0.3840666963 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
14 Hb_003725_050 0.389874942 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
15 Hb_000272_040 0.3922927392 - - -
16 Hb_037790_010 0.3981679976 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
17 Hb_067730_010 0.4036319134 - - hypothetical protein OsJ_21419 [Oryza sativa Japonica Group]
18 Hb_002860_020 0.4169668752 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_002253_090 0.4206109804 - - Chitinase 1 precursor, putative [Ricinus communis]
20 Hb_000351_150 0.4290592378 - - Wall-associated kinase 2, putative [Theobroma cacao]

Gene co-expression network

sample Hb_019617_010 Hb_019617_010 Hb_155720_010 Hb_155720_010 Hb_019617_010--Hb_155720_010 Hb_032634_010 Hb_032634_010 Hb_019617_010--Hb_032634_010 Hb_005822_030 Hb_005822_030 Hb_019617_010--Hb_005822_030 Hb_003605_010 Hb_003605_010 Hb_019617_010--Hb_003605_010 Hb_173121_010 Hb_173121_010 Hb_019617_010--Hb_173121_010 Hb_000018_050 Hb_000018_050 Hb_019617_010--Hb_000018_050 Hb_114988_010 Hb_114988_010 Hb_155720_010--Hb_114988_010 Hb_155720_010--Hb_003605_010 Hb_155720_010--Hb_173121_010 Hb_067730_010 Hb_067730_010 Hb_155720_010--Hb_067730_010 Hb_003725_050 Hb_003725_050 Hb_155720_010--Hb_003725_050 Hb_032634_010--Hb_173121_010 Hb_032634_010--Hb_005822_030 Hb_081703_020 Hb_081703_020 Hb_032634_010--Hb_081703_020 Hb_003927_060 Hb_003927_060 Hb_032634_010--Hb_003927_060 Hb_000608_430 Hb_000608_430 Hb_032634_010--Hb_000608_430 Hb_007904_010 Hb_007904_010 Hb_005822_030--Hb_007904_010 Hb_005822_030--Hb_000018_050 Hb_079902_030 Hb_079902_030 Hb_005822_030--Hb_079902_030 Hb_002042_240 Hb_002042_240 Hb_005822_030--Hb_002042_240 Hb_003605_010--Hb_003927_060 Hb_003605_010--Hb_173121_010 Hb_003605_010--Hb_067730_010 Hb_002996_020 Hb_002996_020 Hb_003605_010--Hb_002996_020 Hb_111854_010 Hb_111854_010 Hb_003605_010--Hb_111854_010 Hb_002235_290 Hb_002235_290 Hb_173121_010--Hb_002235_290 Hb_173121_010--Hb_067730_010 Hb_037790_010 Hb_037790_010 Hb_000018_050--Hb_037790_010 Hb_000018_050--Hb_007904_010 Hb_006212_030 Hb_006212_030 Hb_000018_050--Hb_006212_030 Hb_002374_130 Hb_002374_130 Hb_000018_050--Hb_002374_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0262014 0.00494149 0 0 0 0.00457363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0178442 0 0 0.0191081

CAGE analysis