Hb_019654_030

Information

Type -
Description -
Location Contig19654: 16641-19216
Sequence    

Annotation

kegg
ID pop:POPTR_0005s26890g
description POPTRDRAFT_652170; maoC-like dehydratase domain-containing family protein
nr
ID XP_002307764.1
description maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
swissprot
ID Q8VYI3
description Enoyl-CoA hydratase 2, peroxisomal OS=Arabidopsis thaliana GN=ECH2 PE=1 SV=1
trembl
ID B9H5E2
description MaoC-like dehydratase domain-containing family protein OS=Populus trichocarpa GN=POPTR_0005s26890g PE=4 SV=1
Gene Ontology
ID GO:0003857
description enoyl- hydratase peroxisomal

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19696: 17079-19782
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019654_030 0.0 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
2 Hb_009193_030 0.0794024396 - - hypothetical protein POPTR_0010s16620g [Populus trichocarpa]
3 Hb_000363_360 0.0824858935 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
4 Hb_005306_180 0.0825119079 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
5 Hb_002284_230 0.0850238217 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
6 Hb_003633_050 0.0854251368 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
7 Hb_000291_080 0.0867380774 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
8 Hb_002481_080 0.0878576352 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
9 Hb_000096_160 0.0884179586 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
10 Hb_028227_070 0.0901698544 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
11 Hb_001390_130 0.0903550931 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
12 Hb_002111_040 0.0903841693 - - hypothetical protein JCGZ_16989 [Jatropha curcas]
13 Hb_001157_110 0.0923213999 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
14 Hb_000477_060 0.0926518613 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
15 Hb_001085_240 0.094120893 - - PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]
16 Hb_004920_120 0.0950576808 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000023_090 0.0954322154 - - mak, putative [Ricinus communis]
18 Hb_006907_130 0.0960586464 - - unnamed protein product [Coffea canephora]
19 Hb_000820_090 0.0966083949 - - -
20 Hb_005488_200 0.0995292117 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_019654_030 Hb_019654_030 Hb_009193_030 Hb_009193_030 Hb_019654_030--Hb_009193_030 Hb_000363_360 Hb_000363_360 Hb_019654_030--Hb_000363_360 Hb_005306_180 Hb_005306_180 Hb_019654_030--Hb_005306_180 Hb_002284_230 Hb_002284_230 Hb_019654_030--Hb_002284_230 Hb_003633_050 Hb_003633_050 Hb_019654_030--Hb_003633_050 Hb_000291_080 Hb_000291_080 Hb_019654_030--Hb_000291_080 Hb_000521_130 Hb_000521_130 Hb_009193_030--Hb_000521_130 Hb_009193_030--Hb_002284_230 Hb_001390_130 Hb_001390_130 Hb_009193_030--Hb_001390_130 Hb_000922_390 Hb_000922_390 Hb_009193_030--Hb_000922_390 Hb_000820_090 Hb_000820_090 Hb_009193_030--Hb_000820_090 Hb_000477_060 Hb_000477_060 Hb_000363_360--Hb_000477_060 Hb_000985_060 Hb_000985_060 Hb_000363_360--Hb_000985_060 Hb_003697_040 Hb_003697_040 Hb_000363_360--Hb_003697_040 Hb_000479_190 Hb_000479_190 Hb_000363_360--Hb_000479_190 Hb_000221_160 Hb_000221_160 Hb_000363_360--Hb_000221_160 Hb_000336_240 Hb_000336_240 Hb_000363_360--Hb_000336_240 Hb_000483_260 Hb_000483_260 Hb_005306_180--Hb_000483_260 Hb_000665_050 Hb_000665_050 Hb_005306_180--Hb_000665_050 Hb_000787_020 Hb_000787_020 Hb_005306_180--Hb_000787_020 Hb_001016_120 Hb_001016_120 Hb_005306_180--Hb_001016_120 Hb_015778_010 Hb_015778_010 Hb_005306_180--Hb_015778_010 Hb_002014_020 Hb_002014_020 Hb_005306_180--Hb_002014_020 Hb_003697_050 Hb_003697_050 Hb_002284_230--Hb_003697_050 Hb_000046_350 Hb_000046_350 Hb_002284_230--Hb_000046_350 Hb_025098_010 Hb_025098_010 Hb_002284_230--Hb_025098_010 Hb_002284_230--Hb_003633_050 Hb_003126_070 Hb_003126_070 Hb_002284_230--Hb_003126_070 Hb_000096_160 Hb_000096_160 Hb_003633_050--Hb_000096_160 Hb_001085_240 Hb_001085_240 Hb_003633_050--Hb_001085_240 Hb_005914_170 Hb_005914_170 Hb_003633_050--Hb_005914_170 Hb_011344_190 Hb_011344_190 Hb_003633_050--Hb_011344_190 Hb_003376_250 Hb_003376_250 Hb_003633_050--Hb_003376_250 Hb_000291_080--Hb_001390_130 Hb_002111_040 Hb_002111_040 Hb_000291_080--Hb_002111_040 Hb_000291_080--Hb_000820_090 Hb_000291_080--Hb_003697_040 Hb_004696_080 Hb_004696_080 Hb_000291_080--Hb_004696_080 Hb_000291_080--Hb_000363_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.66131 3.71658 4.52428 12.0029 5.39375 10.2226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5981 12.0369 15.9544 14.7621 6.67446

CAGE analysis