Hb_019654_060

Information

Type -
Description -
Location Contig19654: 33380-37382
Sequence    

Annotation

kegg
ID pop:POPTR_0005s26840g
description POPTRDRAFT_206579; hypothetical protein
nr
ID XP_012073701.1
description PREDICTED: rop guanine nucleotide exchange factor 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q93ZY2
description Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana GN=ROPGEF1 PE=1 SV=2
trembl
ID A0A067KPC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08144 PE=4 SV=1
Gene Ontology
ID GO:0005089
description rop guanine nucleotide exchange factor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19707: 34709-34998 , PASA_asmbl_19708: 36764-37378
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019654_060 0.0 - - PREDICTED: rop guanine nucleotide exchange factor 1-like isoform X1 [Jatropha curcas]
2 Hb_000003_030 0.0930110222 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_004032_210 0.1067716083 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011214_110 0.1068570225 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
5 Hb_000581_030 0.1088019662 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002942_230 0.1150934057 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
7 Hb_008025_010 0.1154876609 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
8 Hb_003929_180 0.1156948894 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g17430 isoform X1 [Glycine max]
9 Hb_002217_080 0.1164325405 - - PREDICTED: probable beta-1,3-galactosyltransferase 16 [Jatropha curcas]
10 Hb_000866_070 0.1190838503 - - PREDICTED: LOW QUALITY PROTEIN: SKP1-like protein 21 [Jatropha curcas]
11 Hb_001545_130 0.1201319699 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
12 Hb_000152_190 0.120736215 - - PREDICTED: K(+) efflux antiporter 5 [Jatropha curcas]
13 Hb_003540_080 0.1210730759 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
14 Hb_006351_020 0.1227849189 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
15 Hb_164010_050 0.1228066065 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
16 Hb_000926_340 0.1231424482 - - PREDICTED: EH domain-containing protein 1 isoform X1 [Jatropha curcas]
17 Hb_000134_120 0.1260419191 - - PREDICTED: uncharacterized protein LOC105628669 [Jatropha curcas]
18 Hb_004218_130 0.1271065951 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
19 Hb_000000_330 0.1274634782 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
20 Hb_002488_010 0.127997491 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]

Gene co-expression network

sample Hb_019654_060 Hb_019654_060 Hb_000003_030 Hb_000003_030 Hb_019654_060--Hb_000003_030 Hb_004032_210 Hb_004032_210 Hb_019654_060--Hb_004032_210 Hb_011214_110 Hb_011214_110 Hb_019654_060--Hb_011214_110 Hb_000581_030 Hb_000581_030 Hb_019654_060--Hb_000581_030 Hb_002942_230 Hb_002942_230 Hb_019654_060--Hb_002942_230 Hb_008025_010 Hb_008025_010 Hb_019654_060--Hb_008025_010 Hb_001545_130 Hb_001545_130 Hb_000003_030--Hb_001545_130 Hb_003430_080 Hb_003430_080 Hb_000003_030--Hb_003430_080 Hb_000003_030--Hb_004032_210 Hb_000003_030--Hb_000581_030 Hb_000000_330 Hb_000000_330 Hb_000003_030--Hb_000000_330 Hb_003929_180 Hb_003929_180 Hb_004032_210--Hb_003929_180 Hb_004223_140 Hb_004223_140 Hb_004032_210--Hb_004223_140 Hb_004032_210--Hb_001545_130 Hb_006351_020 Hb_006351_020 Hb_004032_210--Hb_006351_020 Hb_002284_100 Hb_002284_100 Hb_011214_110--Hb_002284_100 Hb_011214_110--Hb_004223_140 Hb_001677_100 Hb_001677_100 Hb_011214_110--Hb_001677_100 Hb_011214_110--Hb_003929_180 Hb_011214_110--Hb_004032_210 Hb_000940_210 Hb_000940_210 Hb_000581_030--Hb_000940_210 Hb_000237_020 Hb_000237_020 Hb_000581_030--Hb_000237_020 Hb_000581_030--Hb_004032_210 Hb_003740_020 Hb_003740_020 Hb_000581_030--Hb_003740_020 Hb_002217_080 Hb_002217_080 Hb_002942_230--Hb_002217_080 Hb_000866_070 Hb_000866_070 Hb_002942_230--Hb_000866_070 Hb_001411_130 Hb_001411_130 Hb_002942_230--Hb_001411_130 Hb_000001_090 Hb_000001_090 Hb_002942_230--Hb_000001_090 Hb_002687_200 Hb_002687_200 Hb_002942_230--Hb_002687_200 Hb_003540_080 Hb_003540_080 Hb_002942_230--Hb_003540_080 Hb_005074_040 Hb_005074_040 Hb_008025_010--Hb_005074_040 Hb_003058_100 Hb_003058_100 Hb_008025_010--Hb_003058_100 Hb_014497_010 Hb_014497_010 Hb_008025_010--Hb_014497_010 Hb_008025_010--Hb_003929_180 Hb_008025_010--Hb_002942_230 Hb_008025_010--Hb_003540_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.608555 0.974997 3.91639 5.35778 0.878755 1.11397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.725785 0.294742 0.34901 2.17736 2.41133

CAGE analysis