Hb_019654_070

Information

Type -
Description -
Location Contig19654: 58064-64781
Sequence    

Annotation

kegg
ID pmum:103321179
description probable alpha-amylase 2
nr
ID XP_012073704.1
description PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
swissprot
ID Q8LFG1
description Probable alpha-amylase 2 OS=Arabidopsis thaliana GN=AMY2 PE=2 SV=1
trembl
ID A0A067KX57
description Alpha-amylase OS=Jatropha curcas GN=JCGZ_08146 PE=3 SV=1
Gene Ontology
ID GO:0005576
description probable alpha-amylase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19712: 58472-64691 , PASA_asmbl_19713: 63797-64937
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019654_070 0.0 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
2 Hb_098315_100 0.0787401698 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
3 Hb_000155_080 0.084944714 - - guanylate-binding family protein [Populus trichocarpa]
4 Hb_003656_030 0.0958718585 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
5 Hb_000085_340 0.0974713328 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
6 Hb_005488_100 0.0979184518 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
7 Hb_007178_010 0.1012075811 - - pseudo-hevein [Hevea brasiliensis]
8 Hb_013479_020 0.1012587046 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
9 Hb_000856_100 0.1066319594 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
10 Hb_000085_280 0.1101049576 - - PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]
11 Hb_002067_160 0.1120877638 - - Protein MLO, putative [Ricinus communis]
12 Hb_010931_100 0.1150453751 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
13 Hb_094437_070 0.1191998666 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
14 Hb_000603_200 0.1199856338 - - PREDICTED: myosin-15 [Jatropha curcas]
15 Hb_003627_020 0.1207956248 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
16 Hb_004126_010 0.121759355 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
17 Hb_007810_040 0.1221296986 - - PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Jatropha curcas]
18 Hb_002835_190 0.1237906946 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
19 Hb_019613_020 0.1244514977 - - phospholipase C, putative [Ricinus communis]
20 Hb_005488_070 0.1245711868 - - putative cytochrome P450 [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_019654_070 Hb_019654_070 Hb_098315_100 Hb_098315_100 Hb_019654_070--Hb_098315_100 Hb_000155_080 Hb_000155_080 Hb_019654_070--Hb_000155_080 Hb_003656_030 Hb_003656_030 Hb_019654_070--Hb_003656_030 Hb_000085_340 Hb_000085_340 Hb_019654_070--Hb_000085_340 Hb_005488_100 Hb_005488_100 Hb_019654_070--Hb_005488_100 Hb_007178_010 Hb_007178_010 Hb_019654_070--Hb_007178_010 Hb_000856_100 Hb_000856_100 Hb_098315_100--Hb_000856_100 Hb_000376_150 Hb_000376_150 Hb_098315_100--Hb_000376_150 Hb_000365_350 Hb_000365_350 Hb_098315_100--Hb_000365_350 Hb_009193_130 Hb_009193_130 Hb_098315_100--Hb_009193_130 Hb_098315_100--Hb_000155_080 Hb_000172_610 Hb_000172_610 Hb_000155_080--Hb_000172_610 Hb_002627_060 Hb_002627_060 Hb_000155_080--Hb_002627_060 Hb_000155_080--Hb_000856_100 Hb_000155_080--Hb_009193_130 Hb_005488_070 Hb_005488_070 Hb_003656_030--Hb_005488_070 Hb_003656_030--Hb_007178_010 Hb_000208_240 Hb_000208_240 Hb_003656_030--Hb_000208_240 Hb_003627_020 Hb_003627_020 Hb_003656_030--Hb_003627_020 Hb_004126_010 Hb_004126_010 Hb_003656_030--Hb_004126_010 Hb_002067_160 Hb_002067_160 Hb_000085_340--Hb_002067_160 Hb_005754_020 Hb_005754_020 Hb_000085_340--Hb_005754_020 Hb_002391_110 Hb_002391_110 Hb_000085_340--Hb_002391_110 Hb_002377_040 Hb_002377_040 Hb_000085_340--Hb_002377_040 Hb_026048_090 Hb_026048_090 Hb_000085_340--Hb_026048_090 Hb_000176_140 Hb_000176_140 Hb_000085_340--Hb_000176_140 Hb_010931_100 Hb_010931_100 Hb_005488_100--Hb_010931_100 Hb_005488_100--Hb_002067_160 Hb_002609_260 Hb_002609_260 Hb_005488_100--Hb_002609_260 Hb_005488_100--Hb_007178_010 Hb_000264_190 Hb_000264_190 Hb_005488_100--Hb_000264_190 Hb_002232_180 Hb_002232_180 Hb_005488_100--Hb_002232_180 Hb_007178_010--Hb_002232_180 Hb_007810_040 Hb_007810_040 Hb_007178_010--Hb_007810_040 Hb_007178_010--Hb_002067_160 Hb_003906_110 Hb_003906_110 Hb_007178_010--Hb_003906_110 Hb_007178_010--Hb_010931_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
171.612 4.1333 1.91634 14.687 136.377 195.569
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
117.208 40.2396 71.7945 12.4769 5.11408

CAGE analysis