Hb_019654_100

Information

Type -
Description -
Location Contig19654: 80231-82584
Sequence    

Annotation

kegg
ID rcu:RCOM_1599840
description pseudouridylate synthase, putative
nr
ID XP_012073705.1
description PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Jatropha curcas]
swissprot
ID O94396
description tRNA pseudouridine synthase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pus1 PE=1 SV=1
trembl
ID A0A067KL56
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08148 PE=4 SV=1
Gene Ontology
ID GO:0003723
description trna pseudouridine synthase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19714: 80360-82475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019654_100 0.0 - - PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Jatropha curcas]
2 Hb_003862_050 0.0655145988 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
3 Hb_000754_060 0.0783792313 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
4 Hb_000120_950 0.0845118858 - - PREDICTED: protein GRIP [Jatropha curcas]
5 Hb_010795_010 0.0859190814 - - protein with unknown function [Ricinus communis]
6 Hb_175338_030 0.0869939329 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
7 Hb_000436_070 0.0873606438 - - PREDICTED: V-type proton ATPase subunit B 2 [Jatropha curcas]
8 Hb_000123_120 0.0882817659 - - actin depolymerizing factor 4 [Hevea brasiliensis]
9 Hb_002518_140 0.0891455151 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
10 Hb_001623_420 0.0901936425 - - nucleotide binding protein, putative [Ricinus communis]
11 Hb_126643_020 0.0920322355 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
12 Hb_000175_460 0.0953598503 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
13 Hb_001221_170 0.0963598066 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Jatropha curcas]
14 Hb_002496_030 0.0971423456 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
15 Hb_000001_140 0.0976276815 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
16 Hb_002477_160 0.0976511325 - - hypothetical protein L484_013453 [Morus notabilis]
17 Hb_000190_140 0.0985316908 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
18 Hb_153258_010 0.0996119184 - - PREDICTED: uncharacterized protein LOC105642325 [Jatropha curcas]
19 Hb_000619_080 0.0997279968 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 21 [Jatropha curcas]
20 Hb_000030_010 0.100200814 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]

Gene co-expression network

sample Hb_019654_100 Hb_019654_100 Hb_003862_050 Hb_003862_050 Hb_019654_100--Hb_003862_050 Hb_000754_060 Hb_000754_060 Hb_019654_100--Hb_000754_060 Hb_000120_950 Hb_000120_950 Hb_019654_100--Hb_000120_950 Hb_010795_010 Hb_010795_010 Hb_019654_100--Hb_010795_010 Hb_175338_030 Hb_175338_030 Hb_019654_100--Hb_175338_030 Hb_000436_070 Hb_000436_070 Hb_019654_100--Hb_000436_070 Hb_000175_460 Hb_000175_460 Hb_003862_050--Hb_000175_460 Hb_007813_040 Hb_007813_040 Hb_003862_050--Hb_007813_040 Hb_005348_140 Hb_005348_140 Hb_003862_050--Hb_005348_140 Hb_002496_030 Hb_002496_030 Hb_003862_050--Hb_002496_030 Hb_000010_400 Hb_000010_400 Hb_003862_050--Hb_000010_400 Hb_000190_140 Hb_000190_140 Hb_000754_060--Hb_000190_140 Hb_000754_060--Hb_000120_950 Hb_002477_160 Hb_002477_160 Hb_000754_060--Hb_002477_160 Hb_007951_050 Hb_007951_050 Hb_000754_060--Hb_007951_050 Hb_010381_070 Hb_010381_070 Hb_000754_060--Hb_010381_070 Hb_000554_020 Hb_000554_020 Hb_000754_060--Hb_000554_020 Hb_000030_010 Hb_000030_010 Hb_000120_950--Hb_000030_010 Hb_000120_950--Hb_000190_140 Hb_000120_950--Hb_000436_070 Hb_001623_420 Hb_001623_420 Hb_000120_950--Hb_001623_420 Hb_000120_950--Hb_002477_160 Hb_002518_140 Hb_002518_140 Hb_010795_010--Hb_002518_140 Hb_010795_010--Hb_000030_010 Hb_171900_080 Hb_171900_080 Hb_010795_010--Hb_171900_080 Hb_000123_120 Hb_000123_120 Hb_010795_010--Hb_000123_120 Hb_000392_300 Hb_000392_300 Hb_010795_010--Hb_000392_300 Hb_002307_100 Hb_002307_100 Hb_175338_030--Hb_002307_100 Hb_175338_030--Hb_002477_160 Hb_010175_020 Hb_010175_020 Hb_175338_030--Hb_010175_020 Hb_007757_110 Hb_007757_110 Hb_175338_030--Hb_007757_110 Hb_000619_080 Hb_000619_080 Hb_175338_030--Hb_000619_080 Hb_004837_040 Hb_004837_040 Hb_175338_030--Hb_004837_040 Hb_001051_100 Hb_001051_100 Hb_000436_070--Hb_001051_100 Hb_002027_130 Hb_002027_130 Hb_000436_070--Hb_002027_130 Hb_000620_010 Hb_000620_010 Hb_000436_070--Hb_000620_010 Hb_007908_020 Hb_007908_020 Hb_000436_070--Hb_007908_020 Hb_001248_130 Hb_001248_130 Hb_000436_070--Hb_001248_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.5146 16.7179 12.1429 10.2982 29.2611 22.0969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.5796 21.5466 47.292 12.3917 7.12789

CAGE analysis