Hb_019654_170

Information

Type transcription factor
Description TF Family: ARID
Location Contig19654: 119025-121770
Sequence    

Annotation

kegg
ID rcu:RCOM_1599800
description transcription factor, putative
nr
ID XP_012073711.1
description PREDICTED: high mobility group B protein 9 [Jatropha curcas]
swissprot
ID Q9SGS2
description High mobility group B protein 9 OS=Arabidopsis thaliana GN=HMGB9 PE=2 SV=1
trembl
ID A0A067KKU0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08152 PE=4 SV=1
Gene Ontology
ID GO:0005634
description high mobility group b protein 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019654_170 0.0 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
2 Hb_043792_030 0.0704628471 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
3 Hb_000346_050 0.0728472956 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
4 Hb_001856_280 0.0905584667 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
5 Hb_005920_030 0.1173315875 - - putative polyprotein [Oryza sativa Japonica Group]
6 Hb_003311_020 0.1193094698 - - conserved hypothetical protein [Ricinus communis]
7 Hb_020831_070 0.1229183136 - - hypothetical protein VITISV_027174 [Vitis vinifera]
8 Hb_150516_010 0.1259076368 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
9 Hb_001383_080 0.129133062 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
10 Hb_006455_020 0.1317457438 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
11 Hb_008055_030 0.1356328715 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
12 Hb_000522_030 0.1400927764 - - hypothetical protein VITISV_006017 [Vitis vinifera]
13 Hb_000803_230 0.1405487187 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
14 Hb_003994_070 0.1433148449 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
15 Hb_035651_010 0.1464521237 - - receptor-kinase, putative [Ricinus communis]
16 Hb_003927_020 0.1478537045 - - PREDICTED: uncharacterized protein LOC105782546 [Gossypium raimondii]
17 Hb_000432_020 0.1501022001 desease resistance Gene Name: Tropomyosin_1 PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
18 Hb_000567_270 0.1515810426 - - hypothetical protein L484_017162 [Morus notabilis]
19 Hb_000167_070 0.1547362171 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
20 Hb_001250_030 0.1565227383 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_019654_170 Hb_019654_170 Hb_043792_030 Hb_043792_030 Hb_019654_170--Hb_043792_030 Hb_000346_050 Hb_000346_050 Hb_019654_170--Hb_000346_050 Hb_001856_280 Hb_001856_280 Hb_019654_170--Hb_001856_280 Hb_005920_030 Hb_005920_030 Hb_019654_170--Hb_005920_030 Hb_003311_020 Hb_003311_020 Hb_019654_170--Hb_003311_020 Hb_020831_070 Hb_020831_070 Hb_019654_170--Hb_020831_070 Hb_043792_030--Hb_001856_280 Hb_043792_030--Hb_000346_050 Hb_043792_030--Hb_020831_070 Hb_043792_030--Hb_005920_030 Hb_043792_030--Hb_003311_020 Hb_000346_050--Hb_001856_280 Hb_003927_020 Hb_003927_020 Hb_000346_050--Hb_003927_020 Hb_150516_010 Hb_150516_010 Hb_000346_050--Hb_150516_010 Hb_000167_070 Hb_000167_070 Hb_000346_050--Hb_000167_070 Hb_001856_280--Hb_005920_030 Hb_001856_280--Hb_020831_070 Hb_001880_020 Hb_001880_020 Hb_001856_280--Hb_001880_020 Hb_008055_030 Hb_008055_030 Hb_005920_030--Hb_008055_030 Hb_005920_030--Hb_003311_020 Hb_000567_270 Hb_000567_270 Hb_005920_030--Hb_000567_270 Hb_003994_070 Hb_003994_070 Hb_003311_020--Hb_003994_070 Hb_003311_020--Hb_000567_270 Hb_032016_010 Hb_032016_010 Hb_003311_020--Hb_032016_010 Hb_009851_090 Hb_009851_090 Hb_003311_020--Hb_009851_090 Hb_007533_050 Hb_007533_050 Hb_003311_020--Hb_007533_050 Hb_000432_020 Hb_000432_020 Hb_003311_020--Hb_000432_020 Hb_006455_020 Hb_006455_020 Hb_020831_070--Hb_006455_020 Hb_035651_010 Hb_035651_010 Hb_020831_070--Hb_035651_010 Hb_020831_070--Hb_003311_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.785392 0.405027 0.17847 0.0175432 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.042789 0 0 1.6463 7.15626

CAGE analysis