Hb_019654_180

Information

Type -
Description -
Location Contig19654: 122492-123692
Sequence    

Annotation

kegg
ID rcu:RCOM_1599790
description glutathione-s-transferase theta, gst, putative (EC:2.5.1.18)
nr
ID XP_002510614.1
description glutathione-s-transferase theta, gst, putative [Ricinus communis]
swissprot
ID P46423
description Glutathione S-transferase OS=Hyoscyamus muticus PE=1 SV=1
trembl
ID B9R8H1
description Glutathione-s-transferase theta, gst, putative OS=Ricinus communis GN=RCOM_1599790 PE=3 SV=1
Gene Ontology
ID GO:0005622
description glutathione s-transferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19718: 122319-123586
cDNA
(Sanger)
(ID:Location)		 012_H19.ab1: 122599-123586

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019654_180 0.0 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
2 Hb_001729_030 0.0956535237 - - hypothetical protein VITISV_044457 [Vitis vinifera]
3 Hb_000190_230 0.0983460139 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
4 Hb_009838_070 0.1064897353 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
5 Hb_000951_150 0.1111474091 - - hypothetical protein POPTR_0015s05850g [Populus trichocarpa]
6 Hb_004032_280 0.1121767693 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
7 Hb_006831_090 0.1192884712 - - PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
8 Hb_002681_210 0.1204326938 - - PREDICTED: uncharacterized protein LOC105633686 [Jatropha curcas]
9 Hb_000590_110 0.120797317 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000816_240 0.1211516793 - - PREDICTED: phosphoglucan phosphatase LSF2, chloroplastic [Jatropha curcas]
11 Hb_147028_010 0.1215696503 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Prunus mume]
12 Hb_169383_010 0.1222886056 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
13 Hb_002374_180 0.1225033983 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
14 Hb_000922_200 0.1230012622 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
15 Hb_000832_270 0.1230704231 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004096_210 0.1233111875 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
17 Hb_000031_180 0.1235778895 - - sarcosine oxidase, putative [Ricinus communis]
18 Hb_006816_380 0.1242629491 - - PREDICTED: kinesin-4-like [Jatropha curcas]
19 Hb_004650_050 0.1247798951 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
20 Hb_005532_030 0.12541838 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_019654_180 Hb_019654_180 Hb_001729_030 Hb_001729_030 Hb_019654_180--Hb_001729_030 Hb_000190_230 Hb_000190_230 Hb_019654_180--Hb_000190_230 Hb_009838_070 Hb_009838_070 Hb_019654_180--Hb_009838_070 Hb_000951_150 Hb_000951_150 Hb_019654_180--Hb_000951_150 Hb_004032_280 Hb_004032_280 Hb_019654_180--Hb_004032_280 Hb_006831_090 Hb_006831_090 Hb_019654_180--Hb_006831_090 Hb_001729_030--Hb_009838_070 Hb_003768_020 Hb_003768_020 Hb_001729_030--Hb_003768_020 Hb_001729_030--Hb_000190_230 Hb_003581_230 Hb_003581_230 Hb_001729_030--Hb_003581_230 Hb_029576_060 Hb_029576_060 Hb_001729_030--Hb_029576_060 Hb_002235_070 Hb_002235_070 Hb_000190_230--Hb_002235_070 Hb_000950_020 Hb_000950_020 Hb_000190_230--Hb_000950_020 Hb_000711_030 Hb_000711_030 Hb_000190_230--Hb_000711_030 Hb_000190_230--Hb_009838_070 Hb_000590_110 Hb_000590_110 Hb_000190_230--Hb_000590_110 Hb_004650_050 Hb_004650_050 Hb_009838_070--Hb_004650_050 Hb_000327_260 Hb_000327_260 Hb_009838_070--Hb_000327_260 Hb_009393_130 Hb_009393_130 Hb_009838_070--Hb_009393_130 Hb_003680_060 Hb_003680_060 Hb_009838_070--Hb_003680_060 Hb_009838_070--Hb_000711_030 Hb_004096_210 Hb_004096_210 Hb_009838_070--Hb_004096_210 Hb_000922_200 Hb_000922_200 Hb_000951_150--Hb_000922_200 Hb_051663_010 Hb_051663_010 Hb_000951_150--Hb_051663_010 Hb_000816_240 Hb_000816_240 Hb_000951_150--Hb_000816_240 Hb_000904_120 Hb_000904_120 Hb_000951_150--Hb_000904_120 Hb_149694_010 Hb_149694_010 Hb_000951_150--Hb_149694_010 Hb_004032_280--Hb_006831_090 Hb_000599_150 Hb_000599_150 Hb_004032_280--Hb_000599_150 Hb_002600_170 Hb_002600_170 Hb_004032_280--Hb_002600_170 Hb_000329_780 Hb_000329_780 Hb_004032_280--Hb_000329_780 Hb_008536_020 Hb_008536_020 Hb_004032_280--Hb_008536_020 Hb_166718_010 Hb_166718_010 Hb_004032_280--Hb_166718_010 Hb_006831_090--Hb_000329_780 Hb_006831_090--Hb_002600_170 Hb_002374_180 Hb_002374_180 Hb_006831_090--Hb_002374_180 Hb_006831_090--Hb_008536_020 Hb_172426_070 Hb_172426_070 Hb_006831_090--Hb_172426_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.66624 3.54739 76.5418 72.9725 1.82771 1.7771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.72918 1.45051 0.911143 2.19331 107.459

CAGE analysis