Hb_019654_190

Information

Type -
Description -
Location Contig19654: 125470-135478
Sequence    

Annotation

kegg
ID rcu:RCOM_1599780
description protein kinase, putative (EC:2.7.10.2)
nr
ID XP_002510613.1
description protein kinase, putative [Ricinus communis]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID B9R8H0
description Protein kinase, putative OS=Ricinus communis GN=RCOM_1599780 PE=4 SV=1
Gene Ontology
ID GO:0004715
description serine threonine-protein kinase ht1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19719: 125670-129773 , PASA_asmbl_19720: 130936-134436
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019654_190 0.0 - - protein kinase, putative [Ricinus communis]
2 Hb_001269_550 0.0656826149 - - hypothetical protein POPTR_0001s03510g [Populus trichocarpa]
3 Hb_000062_240 0.073052105 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
4 Hb_000032_100 0.0738050468 - - PREDICTED: hydroquinone glucosyltransferase [Vitis vinifera]
5 Hb_007163_090 0.0811266144 - - PREDICTED: protein spt2-like [Jatropha curcas]
6 Hb_000577_010 0.0814235537 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
7 Hb_004837_040 0.0843681169 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
8 Hb_002311_040 0.0857831733 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
9 Hb_004724_060 0.0875413979 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
10 Hb_002026_180 0.0883336762 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
11 Hb_000207_390 0.0890873836 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
12 Hb_007044_140 0.0893285822 - - PREDICTED: translation initiation factor eIF-2B subunit delta [Jatropha curcas]
13 Hb_002496_030 0.0904380377 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
14 Hb_002016_110 0.0905168653 - - transducin family protein [Populus trichocarpa]
15 Hb_000230_080 0.0906387895 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
16 Hb_090804_010 0.0907584744 - - ATP-dependent RNA helicase, putative [Ricinus communis]
17 Hb_001226_030 0.0910035613 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 [Jatropha curcas]
18 Hb_000206_250 0.0940359205 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
19 Hb_000291_110 0.0941024343 - - eukaryotic translation initiation factor [Hevea brasiliensis]
20 Hb_000808_270 0.0950719441 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_019654_190 Hb_019654_190 Hb_001269_550 Hb_001269_550 Hb_019654_190--Hb_001269_550 Hb_000062_240 Hb_000062_240 Hb_019654_190--Hb_000062_240 Hb_000032_100 Hb_000032_100 Hb_019654_190--Hb_000032_100 Hb_007163_090 Hb_007163_090 Hb_019654_190--Hb_007163_090 Hb_000577_010 Hb_000577_010 Hb_019654_190--Hb_000577_010 Hb_004837_040 Hb_004837_040 Hb_019654_190--Hb_004837_040 Hb_002496_030 Hb_002496_030 Hb_001269_550--Hb_002496_030 Hb_000776_110 Hb_000776_110 Hb_001269_550--Hb_000776_110 Hb_000152_820 Hb_000152_820 Hb_001269_550--Hb_000152_820 Hb_006400_060 Hb_006400_060 Hb_001269_550--Hb_006400_060 Hb_002016_110 Hb_002016_110 Hb_001269_550--Hb_002016_110 Hb_000062_240--Hb_004837_040 Hb_001789_090 Hb_001789_090 Hb_000062_240--Hb_001789_090 Hb_002811_360 Hb_002811_360 Hb_000062_240--Hb_002811_360 Hb_000291_110 Hb_000291_110 Hb_000062_240--Hb_000291_110 Hb_000418_100 Hb_000418_100 Hb_000062_240--Hb_000418_100 Hb_015306_020 Hb_015306_020 Hb_000062_240--Hb_015306_020 Hb_000832_020 Hb_000832_020 Hb_000032_100--Hb_000832_020 Hb_028089_010 Hb_028089_010 Hb_000032_100--Hb_028089_010 Hb_000723_130 Hb_000723_130 Hb_000032_100--Hb_000723_130 Hb_002311_040 Hb_002311_040 Hb_000032_100--Hb_002311_040 Hb_090804_010 Hb_090804_010 Hb_000032_100--Hb_090804_010 Hb_001226_030 Hb_001226_030 Hb_007163_090--Hb_001226_030 Hb_001301_200 Hb_001301_200 Hb_007163_090--Hb_001301_200 Hb_000207_390 Hb_000207_390 Hb_007163_090--Hb_000207_390 Hb_007163_090--Hb_000577_010 Hb_123352_020 Hb_123352_020 Hb_007163_090--Hb_123352_020 Hb_001797_050 Hb_001797_050 Hb_007163_090--Hb_001797_050 Hb_004724_060 Hb_004724_060 Hb_000577_010--Hb_004724_060 Hb_001663_030 Hb_001663_030 Hb_000577_010--Hb_001663_030 Hb_003464_060 Hb_003464_060 Hb_000577_010--Hb_003464_060 Hb_000577_010--Hb_001226_030 Hb_000577_010--Hb_001797_050 Hb_000000_370 Hb_000000_370 Hb_004837_040--Hb_000000_370 Hb_004837_040--Hb_002496_030 Hb_000203_160 Hb_000203_160 Hb_004837_040--Hb_000203_160 Hb_000629_010 Hb_000629_010 Hb_004837_040--Hb_000629_010 Hb_175338_030 Hb_175338_030 Hb_004837_040--Hb_175338_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.71497 5.55012 3.86498 3.34291 8.31583 13.2882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.30801 5.44492 13.5054 7.24593 3.69445

CAGE analysis