Hb_019656_010

Information

Type -
Description -
Location Contig19656: 2286-5676
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019656_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_043708_010 0.1818173184 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
3 Hb_131102_010 0.210044353 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_001172_090 0.2444327164 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
5 Hb_004650_060 0.2482915403 - - putative retrotransposon protein [Phyllostachys edulis]
6 Hb_000258_340 0.2546722849 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Jatropha curcas]
7 Hb_010977_010 0.2628033463 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_001450_010 0.2712022422 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
9 Hb_000268_100 0.2789743286 - - -
10 Hb_133820_010 0.2834701436 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
11 Hb_000154_010 0.285134252 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_011478_010 0.2896983953 - - -
13 Hb_057451_040 0.2935246421 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_086077_020 0.2956403466 - - hypothetical protein PHAVU_001G054900g [Phaseolus vulgaris]
15 Hb_003711_030 0.2974201163 - - PREDICTED: uncharacterized protein LOC102621950 [Citrus sinensis]
16 Hb_167183_010 0.2977196128 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_181240_010 0.3016129935 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
18 Hb_001062_020 0.3046694765 - - PREDICTED: uncharacterized protein LOC103962405 [Pyrus x bretschneideri]
19 Hb_003005_040 0.3050773777 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_183191_020 0.3054335962 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_019656_010 Hb_019656_010 Hb_043708_010 Hb_043708_010 Hb_019656_010--Hb_043708_010 Hb_131102_010 Hb_131102_010 Hb_019656_010--Hb_131102_010 Hb_001172_090 Hb_001172_090 Hb_019656_010--Hb_001172_090 Hb_004650_060 Hb_004650_060 Hb_019656_010--Hb_004650_060 Hb_000258_340 Hb_000258_340 Hb_019656_010--Hb_000258_340 Hb_010977_010 Hb_010977_010 Hb_019656_010--Hb_010977_010 Hb_043708_010--Hb_004650_060 Hb_043708_010--Hb_131102_010 Hb_002791_020 Hb_002791_020 Hb_043708_010--Hb_002791_020 Hb_000154_010 Hb_000154_010 Hb_043708_010--Hb_000154_010 Hb_008730_010 Hb_008730_010 Hb_043708_010--Hb_008730_010 Hb_133820_010 Hb_133820_010 Hb_131102_010--Hb_133820_010 Hb_131872_010 Hb_131872_010 Hb_131102_010--Hb_131872_010 Hb_001450_010 Hb_001450_010 Hb_131102_010--Hb_001450_010 Hb_131102_010--Hb_004650_060 Hb_001172_090--Hb_010977_010 Hb_162633_010 Hb_162633_010 Hb_001172_090--Hb_162633_010 Hb_001172_090--Hb_000258_340 Hb_086077_020 Hb_086077_020 Hb_001172_090--Hb_086077_020 Hb_001172_090--Hb_131102_010 Hb_002534_030 Hb_002534_030 Hb_004650_060--Hb_002534_030 Hb_005588_110 Hb_005588_110 Hb_004650_060--Hb_005588_110 Hb_004650_060--Hb_000154_010 Hb_005282_020 Hb_005282_020 Hb_004650_060--Hb_005282_020 Hb_000012_160 Hb_000012_160 Hb_004650_060--Hb_000012_160 Hb_000258_340--Hb_086077_020 Hb_004440_080 Hb_004440_080 Hb_000258_340--Hb_004440_080 Hb_005372_020 Hb_005372_020 Hb_000258_340--Hb_005372_020 Hb_000258_340--Hb_010977_010 Hb_010977_010--Hb_086077_020 Hb_010977_010--Hb_004650_060 Hb_010977_010--Hb_004440_080 Hb_010977_010--Hb_133820_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00515845 0 0 0 0.0167523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0142124 0.0111841 0.0428024 0.00443543 0.119354

CAGE analysis