Hb_019762_020

Information

Type -
Description -
Location Contig19762: 14413-15202
Sequence    

Annotation

kegg
ID mdm:103448104
description selenoprotein K
nr
ID XP_009631845.1
description PREDICTED: selenoprotein K-like [Nicotiana tomentosiformis]
swissprot
ID Q4R8M1
description Selenoprotein K OS=Macaca fascicularis GN=SELK PE=3 SV=3
trembl
ID A9PDX9
description Glycine-rich family protein OS=Populus trichocarpa GN=POPTR_0005s15960g PE=2 SV=1
Gene Ontology
ID GO:0006457
description selenoprotein k

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19868: 12436-15265 , PASA_asmbl_19872: 12490-14480
cDNA
(Sanger)
(ID:Location)		 013_A14.ab1: 12461-15090 , 015_D16.ab1: 14443-14703 , 026_F10.ab1: 12443-15031 , 026_J24.ab1: 12470-15043 , 027_D08.ab1: 12443-15049 , 029_E11.ab1: 12447-15056 , 040_D19.ab1: 12443-15043 , 043_P20.ab1: 12470-15052 , 050_E15.ab1: 12466-15248

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019762_020 0.0 - - PREDICTED: selenoprotein K-like [Nicotiana tomentosiformis]
2 Hb_002411_040 0.077625237 - - PREDICTED: cysteine proteinase inhibitor 6 [Jatropha curcas]
3 Hb_026314_020 0.082007185 - - hypothetical protein POPTR_0019s10050g [Populus trichocarpa]
4 Hb_017413_010 0.0857690613 - - -
5 Hb_003025_040 0.0876791955 - - PREDICTED: elongin-A [Jatropha curcas]
6 Hb_005278_020 0.0883029715 - - PREDICTED: sorcin-like [Jatropha curcas]
7 Hb_004784_020 0.091225359 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
8 Hb_000331_200 0.0938046205 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
9 Hb_000317_390 0.0943261455 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
10 Hb_008790_030 0.0955835005 - - PREDICTED: probable magnesium transporter NIPA9 [Jatropha curcas]
11 Hb_001318_250 0.0991915478 - - PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]
12 Hb_000331_450 0.102681487 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
13 Hb_152784_010 0.1040758821 - - hypothetical protein PRUPE_ppa010913mg [Prunus persica]
14 Hb_003502_090 0.1045328531 - - ATP synthase subunit d, putative [Ricinus communis]
15 Hb_001703_060 0.104762657 - - protein kinase, putative [Ricinus communis]
16 Hb_000808_190 0.1052968174 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
17 Hb_002518_210 0.1059255612 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
18 Hb_007009_010 0.105995835 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675 [Populus euphratica]
19 Hb_001047_240 0.1070200718 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 20-like [Jatropha curcas]
20 Hb_033594_150 0.1090126145 - - unknown [Lotus japonicus]

Gene co-expression network

sample Hb_019762_020 Hb_019762_020 Hb_002411_040 Hb_002411_040 Hb_019762_020--Hb_002411_040 Hb_026314_020 Hb_026314_020 Hb_019762_020--Hb_026314_020 Hb_017413_010 Hb_017413_010 Hb_019762_020--Hb_017413_010 Hb_003025_040 Hb_003025_040 Hb_019762_020--Hb_003025_040 Hb_005278_020 Hb_005278_020 Hb_019762_020--Hb_005278_020 Hb_004784_020 Hb_004784_020 Hb_019762_020--Hb_004784_020 Hb_000331_200 Hb_000331_200 Hb_002411_040--Hb_000331_200 Hb_002601_110 Hb_002601_110 Hb_002411_040--Hb_002601_110 Hb_000317_390 Hb_000317_390 Hb_002411_040--Hb_000317_390 Hb_001703_060 Hb_001703_060 Hb_002411_040--Hb_001703_060 Hb_008790_030 Hb_008790_030 Hb_002411_040--Hb_008790_030 Hb_026314_020--Hb_005278_020 Hb_000826_100 Hb_000826_100 Hb_026314_020--Hb_000826_100 Hb_002343_060 Hb_002343_060 Hb_026314_020--Hb_002343_060 Hb_000005_090 Hb_000005_090 Hb_026314_020--Hb_000005_090 Hb_001318_250 Hb_001318_250 Hb_026314_020--Hb_001318_250 Hb_000789_230 Hb_000789_230 Hb_017413_010--Hb_000789_230 Hb_000331_450 Hb_000331_450 Hb_017413_010--Hb_000331_450 Hb_017413_010--Hb_005278_020 Hb_017491_060 Hb_017491_060 Hb_017413_010--Hb_017491_060 Hb_006846_060 Hb_006846_060 Hb_017413_010--Hb_006846_060 Hb_000373_120 Hb_000373_120 Hb_017413_010--Hb_000373_120 Hb_003025_040--Hb_017413_010 Hb_003025_040--Hb_000789_230 Hb_087749_010 Hb_087749_010 Hb_003025_040--Hb_087749_010 Hb_003025_040--Hb_000373_120 Hb_003025_040--Hb_006846_060 Hb_012022_120 Hb_012022_120 Hb_005278_020--Hb_012022_120 Hb_001016_030 Hb_001016_030 Hb_005278_020--Hb_001016_030 Hb_001842_040 Hb_001842_040 Hb_005278_020--Hb_001842_040 Hb_005278_020--Hb_004784_020 Hb_078185_010 Hb_078185_010 Hb_004784_020--Hb_078185_010 Hb_066768_010 Hb_066768_010 Hb_004784_020--Hb_066768_010 Hb_001047_240 Hb_001047_240 Hb_004784_020--Hb_001047_240 Hb_031089_040 Hb_031089_040 Hb_004784_020--Hb_031089_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.886 17.0816 33.6732 117.502 51.291 63.5262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
118.191 115.465 66.5734 41.6091 50.1267

CAGE analysis