Hb_019762_030

Information

Type -
Description -
Location Contig19762: 27807-29511
Sequence    

Annotation

kegg
ID pop:POPTR_0002s08720g
description POPTRDRAFT_551488; hypothetical protein
nr
ID XP_002301003.1
description hypothetical protein POPTR_0002s08720g [Populus trichocarpa]
swissprot
ID Q07512
description Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1
trembl
ID B9GUE0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08720g PE=3 SV=1
Gene Ontology
ID GO:0005737
description flavonol synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19873: 27807-29508
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019762_030 0.0 - - hypothetical protein POPTR_0002s08720g [Populus trichocarpa]
2 Hb_000853_340 0.0313418134 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X2 [Populus euphratica]
3 Hb_005198_010 0.0611931389 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
4 Hb_002235_260 0.0618113622 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
5 Hb_004117_060 0.0640068513 - - PREDICTED: GDSL esterase/lipase At1g33811 [Jatropha curcas]
6 Hb_155874_020 0.0646419391 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
7 Hb_003702_010 0.0739227553 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
8 Hb_008195_100 0.0767060753 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
9 Hb_001926_010 0.0775085825 - - hypothetical protein Csa_2G383910 [Cucumis sativus]
10 Hb_000173_330 0.0784649423 - - PREDICTED: glutamine synthetase leaf isozyme, chloroplastic [Vitis vinifera]
11 Hb_000556_050 0.0788054861 - - -
12 Hb_001921_040 0.0825839693 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
13 Hb_000465_110 0.0873930307 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Jatropha curcas]
14 Hb_000023_170 0.0889188416 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
15 Hb_063584_010 0.0902320778 - - hypothetical protein JCGZ_10530 [Jatropha curcas]
16 Hb_132840_060 0.0910421295 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
17 Hb_017358_060 0.0913762577 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
18 Hb_008165_010 0.0943928786 - - PREDICTED: 36.4 kDa proline-rich protein [Solanum lycopersicum]
19 Hb_000023_030 0.0954733674 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
20 Hb_031862_190 0.0965806043 - - -

Gene co-expression network

sample Hb_019762_030 Hb_019762_030 Hb_000853_340 Hb_000853_340 Hb_019762_030--Hb_000853_340 Hb_005198_010 Hb_005198_010 Hb_019762_030--Hb_005198_010 Hb_002235_260 Hb_002235_260 Hb_019762_030--Hb_002235_260 Hb_004117_060 Hb_004117_060 Hb_019762_030--Hb_004117_060 Hb_155874_020 Hb_155874_020 Hb_019762_030--Hb_155874_020 Hb_003702_010 Hb_003702_010 Hb_019762_030--Hb_003702_010 Hb_000853_340--Hb_155874_020 Hb_000853_340--Hb_003702_010 Hb_008195_100 Hb_008195_100 Hb_000853_340--Hb_008195_100 Hb_000023_170 Hb_000023_170 Hb_000853_340--Hb_000023_170 Hb_132840_060 Hb_132840_060 Hb_000853_340--Hb_132840_060 Hb_000556_050 Hb_000556_050 Hb_005198_010--Hb_000556_050 Hb_000005_160 Hb_000005_160 Hb_005198_010--Hb_000005_160 Hb_005198_010--Hb_004117_060 Hb_005198_010--Hb_002235_260 Hb_177533_010 Hb_177533_010 Hb_005198_010--Hb_177533_010 Hb_002235_260--Hb_004117_060 Hb_001921_040 Hb_001921_040 Hb_002235_260--Hb_001921_040 Hb_008165_010 Hb_008165_010 Hb_002235_260--Hb_008165_010 Hb_000023_030 Hb_000023_030 Hb_002235_260--Hb_000023_030 Hb_004117_060--Hb_000023_030 Hb_004117_060--Hb_001921_040 Hb_004117_060--Hb_008165_010 Hb_002045_020 Hb_002045_020 Hb_004117_060--Hb_002045_020 Hb_155874_020--Hb_132840_060 Hb_155874_020--Hb_003702_010 Hb_155874_020--Hb_000023_170 Hb_155874_020--Hb_008195_100 Hb_008032_010 Hb_008032_010 Hb_155874_020--Hb_008032_010 Hb_003702_010--Hb_000023_170 Hb_009189_090 Hb_009189_090 Hb_003702_010--Hb_009189_090 Hb_003702_010--Hb_132840_060 Hb_005357_210 Hb_005357_210 Hb_003702_010--Hb_005357_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0579132 465.62 37.4272 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 77.9155

CAGE analysis