Hb_019818_010

Information

Type -
Description -
Location Contig19818: 9692-12651
Sequence    

Annotation

kegg
ID rcu:RCOM_0238060
description Potassium transporter, putative
nr
ID XP_012069364.1
description PREDICTED: potassium transporter 5-like [Jatropha curcas]
swissprot
ID Q9M7K4
description Potassium transporter 5 OS=Arabidopsis thaliana GN=POT5 PE=1 SV=1
trembl
ID A0A067L667
description Potassium transporter OS=Jatropha curcas GN=JCGZ_01993 PE=3 SV=1
Gene Ontology
ID GO:0016021
description potassium transporter 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019818_010 0.0 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
2 Hb_017400_010 0.0342708626 - - unnamed protein product [Vitis vinifera]
3 Hb_012092_070 0.0356414894 - - PREDICTED: uncharacterized protein LOC105644084 [Jatropha curcas]
4 Hb_002367_030 0.1111748214 - - hypothetical protein POPTR_0001s30725g [Populus trichocarpa]
5 Hb_132840_120 0.1126463816 - - Vacuolar protein sorting-associated protein 8 like [Glycine soja]
6 Hb_001184_140 0.1705628324 - - hypothetical protein B456_008G022200 [Gossypium raimondii]
7 Hb_004728_030 0.172433537 - - hypothetical protein, partial [Lactobacillus brevis]
8 Hb_001102_310 0.2073210599 - - Protein AFR, putative [Ricinus communis]
9 Hb_003540_180 0.2089966185 - - -
10 Hb_004947_010 0.2323828933 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
11 Hb_094529_020 0.2471647968 - - leucine-rich repeat containing protein, putative [Ricinus communis]
12 Hb_001085_140 0.2495773413 - - conserved hypothetical protein [Ricinus communis]
13 Hb_033153_080 0.2534966978 - - PREDICTED: anthocyanidin 3-O-glucoside 2''-O-glucosyltransferase-like [Populus euphratica]
14 Hb_091537_010 0.2589011528 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
15 Hb_067034_020 0.2629997093 - - PREDICTED: iridoid synthase [Jatropha curcas]
16 Hb_000836_150 0.2797098767 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
17 Hb_008054_060 0.2824642497 - - PREDICTED: beta-amyrin synthase-like [Populus euphratica]
18 Hb_006746_010 0.2919137652 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_052640_010 0.2964232291 - - PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Jatropha curcas]
20 Hb_002686_100 0.3145078927 - - -

Gene co-expression network

sample Hb_019818_010 Hb_019818_010 Hb_017400_010 Hb_017400_010 Hb_019818_010--Hb_017400_010 Hb_012092_070 Hb_012092_070 Hb_019818_010--Hb_012092_070 Hb_002367_030 Hb_002367_030 Hb_019818_010--Hb_002367_030 Hb_132840_120 Hb_132840_120 Hb_019818_010--Hb_132840_120 Hb_001184_140 Hb_001184_140 Hb_019818_010--Hb_001184_140 Hb_004728_030 Hb_004728_030 Hb_019818_010--Hb_004728_030 Hb_017400_010--Hb_012092_070 Hb_017400_010--Hb_002367_030 Hb_017400_010--Hb_132840_120 Hb_003540_180 Hb_003540_180 Hb_017400_010--Hb_003540_180 Hb_001102_310 Hb_001102_310 Hb_017400_010--Hb_001102_310 Hb_012092_070--Hb_132840_120 Hb_012092_070--Hb_004728_030 Hb_012092_070--Hb_002367_030 Hb_012092_070--Hb_001184_140 Hb_002367_030--Hb_003540_180 Hb_002367_030--Hb_001102_310 Hb_091537_010 Hb_091537_010 Hb_002367_030--Hb_091537_010 Hb_132840_120--Hb_004728_030 Hb_132840_120--Hb_001184_140 Hb_006746_010 Hb_006746_010 Hb_132840_120--Hb_006746_010 Hb_001184_140--Hb_017400_010 Hb_001184_140--Hb_004728_030 Hb_001184_140--Hb_002367_030 Hb_004728_030--Hb_006746_010 Hb_008609_030 Hb_008609_030 Hb_004728_030--Hb_008609_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0322612 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0153932 0 0 0

CAGE analysis