Hb_019863_070

Information

Type -
Description -
Location Contig19863: 120683-134502
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10720g
description POPTRDRAFT_762562; transducin family protein
nr
ID XP_012089724.1
description PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
swissprot
ID Q93YQ1
description Regulatory-associated protein of TOR 1 OS=Arabidopsis thaliana GN=RAPTOR1 PE=1 SV=1
trembl
ID A0A067JJ24
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00385 PE=4 SV=1
Gene Ontology
ID GO:0031931
description transducin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19932: 120652-125072 , PASA_asmbl_19934: 125122-126949 , PASA_asmbl_19935: 125122-126818 , PASA_asmbl_19936: 125122-126827 , PASA_asmbl_19937: 127829-134429 , PASA_asmbl_19938: 127829-134429 , PASA_asmbl_19939: 129359-129615
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019863_070 0.0 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
2 Hb_002818_030 0.0484256278 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
3 Hb_003849_110 0.0523352093 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
4 Hb_000868_090 0.0593101435 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
5 Hb_005054_110 0.0606807436 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
6 Hb_000258_160 0.0607726067 - - conserved hypothetical protein [Ricinus communis]
7 Hb_015807_150 0.0617808242 - - actin binding protein, putative [Ricinus communis]
8 Hb_011386_010 0.0633973597 - - mitochondrial carrier protein, putative [Ricinus communis]
9 Hb_000049_210 0.0660895961 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
10 Hb_000111_290 0.0662287176 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
11 Hb_000340_530 0.0676563363 - - hypothetical protein VITISV_016664 [Vitis vinifera]
12 Hb_003906_200 0.0680070422 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
13 Hb_008770_030 0.0683696034 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Jatropha curcas]
14 Hb_015934_040 0.0685713564 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
15 Hb_002450_020 0.069118742 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
16 Hb_004916_010 0.069602324 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
17 Hb_003494_020 0.0697063995 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
18 Hb_000329_710 0.069993664 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
19 Hb_003464_090 0.0700033169 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
20 Hb_000710_060 0.0702316523 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_019863_070 Hb_019863_070 Hb_002818_030 Hb_002818_030 Hb_019863_070--Hb_002818_030 Hb_003849_110 Hb_003849_110 Hb_019863_070--Hb_003849_110 Hb_000868_090 Hb_000868_090 Hb_019863_070--Hb_000868_090 Hb_005054_110 Hb_005054_110 Hb_019863_070--Hb_005054_110 Hb_000258_160 Hb_000258_160 Hb_019863_070--Hb_000258_160 Hb_015807_150 Hb_015807_150 Hb_019863_070--Hb_015807_150 Hb_004916_010 Hb_004916_010 Hb_002818_030--Hb_004916_010 Hb_002818_030--Hb_003849_110 Hb_000049_260 Hb_000049_260 Hb_002818_030--Hb_000049_260 Hb_002798_070 Hb_002798_070 Hb_002818_030--Hb_002798_070 Hb_000069_310 Hb_000069_310 Hb_002818_030--Hb_000069_310 Hb_003464_090 Hb_003464_090 Hb_003849_110--Hb_003464_090 Hb_003428_010 Hb_003428_010 Hb_003849_110--Hb_003428_010 Hb_000029_060 Hb_000029_060 Hb_003849_110--Hb_000029_060 Hb_003849_110--Hb_004916_010 Hb_007765_110 Hb_007765_110 Hb_000868_090--Hb_007765_110 Hb_000868_090--Hb_002818_030 Hb_000868_090--Hb_003464_090 Hb_000318_250 Hb_000318_250 Hb_000868_090--Hb_000318_250 Hb_003906_200 Hb_003906_200 Hb_000868_090--Hb_003906_200 Hb_011386_010 Hb_011386_010 Hb_005054_110--Hb_011386_010 Hb_000049_210 Hb_000049_210 Hb_005054_110--Hb_000049_210 Hb_000260_350 Hb_000260_350 Hb_005054_110--Hb_000260_350 Hb_149985_010 Hb_149985_010 Hb_005054_110--Hb_149985_010 Hb_001304_110 Hb_001304_110 Hb_005054_110--Hb_001304_110 Hb_003494_020 Hb_003494_020 Hb_000258_160--Hb_003494_020 Hb_000041_110 Hb_000041_110 Hb_000258_160--Hb_000041_110 Hb_000340_530 Hb_000340_530 Hb_000258_160--Hb_000340_530 Hb_004079_060 Hb_004079_060 Hb_000258_160--Hb_004079_060 Hb_162275_050 Hb_162275_050 Hb_000258_160--Hb_162275_050 Hb_008770_030 Hb_008770_030 Hb_015807_150--Hb_008770_030 Hb_015807_150--Hb_002818_030 Hb_015934_040 Hb_015934_040 Hb_015807_150--Hb_015934_040 Hb_000032_520 Hb_000032_520 Hb_015807_150--Hb_000032_520 Hb_000297_010 Hb_000297_010 Hb_015807_150--Hb_000297_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0701 17.9902 9.62852 14.5586 10.6757 11.6241
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3776 17.0967 15.4425 13.9411 14.081

CAGE analysis