Hb_019925_020

Information

Type -
Description -
Location Contig19925: 44131-47537
Sequence    

Annotation

kegg
ID rcu:RCOM_0867830
description electron carrier, putative
nr
ID XP_002519938.1
description electron carrier, putative [Ricinus communis]
swissprot
ID O65709
description Long-chain-alcohol oxidase FAO4A OS=Arabidopsis thaliana GN=FAO4A PE=3 SV=2
trembl
ID B9S1S3
description Long-chain-alcohol oxidase OS=Ricinus communis GN=RCOM_0867830 PE=3 SV=1
Gene Ontology
ID GO:0016020
description long-chain-alcohol oxidase fao4a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019925_020 0.0 - - electron carrier, putative [Ricinus communis]
2 Hb_000856_210 0.0608807535 - - nitrate transporter, putative [Ricinus communis]
3 Hb_000207_240 0.0974389022 - - hypothetical protein RCOM_0686540 [Ricinus communis]
4 Hb_006351_120 0.1064547323 - - hypothetical protein CICLE_v10030803mg [Citrus clementina]
5 Hb_000000_290 0.1081918489 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
6 Hb_005018_030 0.1140571416 - - hypothetical protein CICLE_v10019811mg [Citrus clementina]
7 Hb_000023_180 0.1178935514 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
8 Hb_001396_130 0.1284357066 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001158_250 0.1285754111 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001097_140 0.1296275538 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001232_040 0.1303060586 - - PREDICTED: uncharacterized protein LOC105634974 [Jatropha curcas]
12 Hb_001950_100 0.1304497572 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
13 Hb_000622_030 0.1311330604 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
14 Hb_030949_010 0.1323142081 - - hypothetical protein POPTR_0001s24140g [Populus trichocarpa]
15 Hb_000020_180 0.1358039677 - - laccase, putative [Ricinus communis]
16 Hb_012691_060 0.1370609121 - - PREDICTED: isoflavone 2'-hydroxylase-like isoform X1 [Prunus mume]
17 Hb_008001_030 0.1410498938 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
18 Hb_001131_050 0.1430049626 - - hypothetical protein EUGRSUZ_C02968 [Eucalyptus grandis]
19 Hb_005183_030 0.1437406151 - - PREDICTED: probable calcium-binding protein CML16 [Jatropha curcas]
20 Hb_006916_140 0.1456821343 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]

Gene co-expression network

sample Hb_019925_020 Hb_019925_020 Hb_000856_210 Hb_000856_210 Hb_019925_020--Hb_000856_210 Hb_000207_240 Hb_000207_240 Hb_019925_020--Hb_000207_240 Hb_006351_120 Hb_006351_120 Hb_019925_020--Hb_006351_120 Hb_000000_290 Hb_000000_290 Hb_019925_020--Hb_000000_290 Hb_005018_030 Hb_005018_030 Hb_019925_020--Hb_005018_030 Hb_000023_180 Hb_000023_180 Hb_019925_020--Hb_000023_180 Hb_000856_210--Hb_000207_240 Hb_000856_210--Hb_006351_120 Hb_002876_280 Hb_002876_280 Hb_000856_210--Hb_002876_280 Hb_003858_060 Hb_003858_060 Hb_000856_210--Hb_003858_060 Hb_094437_020 Hb_094437_020 Hb_000856_210--Hb_094437_020 Hb_001097_140 Hb_001097_140 Hb_000207_240--Hb_001097_140 Hb_003714_030 Hb_003714_030 Hb_000207_240--Hb_003714_030 Hb_000207_240--Hb_006351_120 Hb_001396_130 Hb_001396_130 Hb_000207_240--Hb_001396_130 Hb_006351_120--Hb_094437_020 Hb_125181_010 Hb_125181_010 Hb_006351_120--Hb_125181_010 Hb_006351_120--Hb_001396_130 Hb_000000_290--Hb_000023_180 Hb_000622_030 Hb_000622_030 Hb_000000_290--Hb_000622_030 Hb_005183_100 Hb_005183_100 Hb_000000_290--Hb_005183_100 Hb_005723_090 Hb_005723_090 Hb_000000_290--Hb_005723_090 Hb_002835_070 Hb_002835_070 Hb_000000_290--Hb_002835_070 Hb_016277_030 Hb_016277_030 Hb_000000_290--Hb_016277_030 Hb_012691_060 Hb_012691_060 Hb_005018_030--Hb_012691_060 Hb_000020_180 Hb_000020_180 Hb_005018_030--Hb_000020_180 Hb_000230_490 Hb_000230_490 Hb_005018_030--Hb_000230_490 Hb_000752_040 Hb_000752_040 Hb_005018_030--Hb_000752_040 Hb_005183_030 Hb_005183_030 Hb_005018_030--Hb_005183_030 Hb_005391_050 Hb_005391_050 Hb_000023_180--Hb_005391_050 Hb_000023_180--Hb_002835_070 Hb_005329_030 Hb_005329_030 Hb_000023_180--Hb_005329_030 Hb_001976_100 Hb_001976_100 Hb_000023_180--Hb_001976_100 Hb_001950_100 Hb_001950_100 Hb_000023_180--Hb_001950_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0172794 2.24707 0.351704 5.34604 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.625763 6.25318

CAGE analysis