Hb_019936_010

Information

Type -
Description -
Location Contig19936: 20282-25171
Sequence    

Annotation

kegg
ID rcu:RCOM_1621740
description ankyrin repeat-containing protein, putative
nr
ID XP_012067741.1
description PREDICTED: 26S proteasome non-ATPase regulatory subunit 10 [Jatropha curcas]
swissprot
ID Q9EP71
description Ankycorbin OS=Mus musculus GN=Rai14 PE=1 SV=1
trembl
ID A0A067KYQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15679 PE=4 SV=1
Gene Ontology
ID GO:0005515
description 26s proteasome non-atpase regulatory subunit 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19970: 20982-27340 , PASA_asmbl_19972: 20251-25133 , PASA_asmbl_19973: 24749-27340 , PASA_asmbl_19974: 23921-24261 , PASA_asmbl_19975: 24749-25307
cDNA
(Sanger)
(ID:Location)		 008_M12.ab1: 24912-27340 , 009_N07.ab1: 20251-25133 , 038_A16.ab1: 24786-27337

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019936_010 0.0 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 10 [Jatropha curcas]
2 Hb_011616_030 0.1441109645 - - -
3 Hb_000668_010 0.1456769773 - - PREDICTED: probable beta-D-xylosidase 7 [Jatropha curcas]
4 Hb_032264_130 0.1511284243 - - hypothetical protein JCGZ_02516 [Jatropha curcas]
5 Hb_000525_040 0.1511667993 - - -
6 Hb_010368_070 0.1605446867 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001454_390 0.1649083672 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
8 Hb_002388_060 0.1705555062 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004032_460 0.1724673022 - - -
10 Hb_170116_010 0.1736671501 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
11 Hb_053262_010 0.183947878 - - -
12 Hb_000188_190 0.1897622076 - - -
13 Hb_002903_120 0.1920426039 - - -
14 Hb_017417_010 0.1929559384 - - -
15 Hb_000849_150 0.1938974592 - - hypothetical protein JCGZ_15099 [Jatropha curcas]
16 Hb_000544_040 0.1948491718 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
17 Hb_003304_080 0.1957767603 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
18 Hb_000300_540 0.1989008313 - - PREDICTED: syntaxin-132 [Jatropha curcas]
19 Hb_001916_130 0.1993889743 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
20 Hb_000038_130 0.1993913763 - - -

Gene co-expression network

sample Hb_019936_010 Hb_019936_010 Hb_011616_030 Hb_011616_030 Hb_019936_010--Hb_011616_030 Hb_000668_010 Hb_000668_010 Hb_019936_010--Hb_000668_010 Hb_032264_130 Hb_032264_130 Hb_019936_010--Hb_032264_130 Hb_000525_040 Hb_000525_040 Hb_019936_010--Hb_000525_040 Hb_010368_070 Hb_010368_070 Hb_019936_010--Hb_010368_070 Hb_001454_390 Hb_001454_390 Hb_019936_010--Hb_001454_390 Hb_011616_030--Hb_032264_130 Hb_170116_010 Hb_170116_010 Hb_011616_030--Hb_170116_010 Hb_000523_020 Hb_000523_020 Hb_011616_030--Hb_000523_020 Hb_002388_060 Hb_002388_060 Hb_011616_030--Hb_002388_060 Hb_095397_010 Hb_095397_010 Hb_011616_030--Hb_095397_010 Hb_017417_010 Hb_017417_010 Hb_000668_010--Hb_017417_010 Hb_000188_190 Hb_000188_190 Hb_000668_010--Hb_000188_190 Hb_003788_040 Hb_003788_040 Hb_000668_010--Hb_003788_040 Hb_000544_040 Hb_000544_040 Hb_000668_010--Hb_000544_040 Hb_004032_460 Hb_004032_460 Hb_000668_010--Hb_004032_460 Hb_032264_130--Hb_002388_060 Hb_053262_010 Hb_053262_010 Hb_032264_130--Hb_053262_010 Hb_007545_210 Hb_007545_210 Hb_032264_130--Hb_007545_210 Hb_032264_130--Hb_170116_010 Hb_000525_040--Hb_010368_070 Hb_002903_120 Hb_002903_120 Hb_000525_040--Hb_002903_120 Hb_000525_040--Hb_004032_460 Hb_007634_020 Hb_007634_020 Hb_000525_040--Hb_007634_020 Hb_000525_040--Hb_011616_030 Hb_010368_070--Hb_002903_120 Hb_010368_070--Hb_004032_460 Hb_001628_110 Hb_001628_110 Hb_010368_070--Hb_001628_110 Hb_002172_030 Hb_002172_030 Hb_010368_070--Hb_002172_030 Hb_000050_120 Hb_000050_120 Hb_010368_070--Hb_000050_120 Hb_001780_060 Hb_001780_060 Hb_001454_390--Hb_001780_060 Hb_000590_090 Hb_000590_090 Hb_001454_390--Hb_000590_090 Hb_001454_390--Hb_170116_010 Hb_002875_090 Hb_002875_090 Hb_001454_390--Hb_002875_090 Hb_003253_010 Hb_003253_010 Hb_001454_390--Hb_003253_010 Hb_000038_130 Hb_000038_130 Hb_001454_390--Hb_000038_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.24 0.507531 0.975377 0.751231 13.2467 4.18459
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.66007 4.00586 1.7913 0.466445 0.542679

CAGE analysis