Hb_019952_010

Information

Type -
Description -
Location Contig19952: 2064-2669
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019952_010 0.0 - - -
2 Hb_000507_010 0.0127878078 - - hypothetical protein POPTR_0007s02420g [Populus trichocarpa]
3 Hb_000933_120 0.0198533724 - - hypothetical protein L484_011925 [Morus notabilis]
4 Hb_001998_190 0.058209455 transcription factor TF Family: CSD PREDICTED: uncharacterized protein LOC105636942 [Jatropha curcas]
5 Hb_000976_420 0.0603963426 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000856_330 0.0667081055 - - PREDICTED: protein QUIRKY isoform X1 [Cicer arietinum]
7 Hb_001300_120 0.0762041636 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
8 Hb_011671_200 0.099693287 - - -
9 Hb_005545_090 0.1026379125 - - -
10 Hb_000408_010 0.1099774707 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
11 Hb_001246_150 0.1137076294 - - hypothetical protein MIMGU_mgv1a021562mg [Erythranthe guttata]
12 Hb_005211_110 0.123229302 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
13 Hb_048308_010 0.1238254274 - - Peroxidase superfamily protein [Theobroma cacao]
14 Hb_002481_070 0.1324192656 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
15 Hb_000203_030 0.1331418903 - - -
16 Hb_000059_290 0.1516010569 - - pterin-4-alpha-carbinolamine dehydratase, putative [Ricinus communis]
17 Hb_005433_030 0.1783426687 transcription factor TF Family: MYB unnamed protein product [Vitis vinifera]
18 Hb_100873_040 0.1811756017 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
19 Hb_004725_040 0.1815351668 - - -
20 Hb_008764_010 0.1843577355 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_019952_010 Hb_019952_010 Hb_000507_010 Hb_000507_010 Hb_019952_010--Hb_000507_010 Hb_000933_120 Hb_000933_120 Hb_019952_010--Hb_000933_120 Hb_001998_190 Hb_001998_190 Hb_019952_010--Hb_001998_190 Hb_000976_420 Hb_000976_420 Hb_019952_010--Hb_000976_420 Hb_000856_330 Hb_000856_330 Hb_019952_010--Hb_000856_330 Hb_001300_120 Hb_001300_120 Hb_019952_010--Hb_001300_120 Hb_000507_010--Hb_000933_120 Hb_000507_010--Hb_001998_190 Hb_000507_010--Hb_000976_420 Hb_000507_010--Hb_000856_330 Hb_000507_010--Hb_001300_120 Hb_000933_120--Hb_000976_420 Hb_000933_120--Hb_001998_190 Hb_000933_120--Hb_000856_330 Hb_000933_120--Hb_001300_120 Hb_000408_010 Hb_000408_010 Hb_001998_190--Hb_000408_010 Hb_000203_030 Hb_000203_030 Hb_001998_190--Hb_000203_030 Hb_000059_290 Hb_000059_290 Hb_001998_190--Hb_000059_290 Hb_011671_200 Hb_011671_200 Hb_000976_420--Hb_011671_200 Hb_000976_420--Hb_000856_330 Hb_000976_420--Hb_001300_120 Hb_000856_330--Hb_001300_120 Hb_000856_330--Hb_011671_200 Hb_005545_090 Hb_005545_090 Hb_001300_120--Hb_005545_090 Hb_001300_120--Hb_011671_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.101802 0.0882691 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0409898 0

CAGE analysis