Hb_019962_030

Information

Type -
Description -
Location Contig19962: 49159-56726
Sequence    

Annotation

kegg
ID rcu:RCOM_1618790
description hypothetical protein
nr
ID XP_012092924.1
description PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
swissprot
ID Q9FN50
description Protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic OS=Arabidopsis thaliana GN=CPP1 PE=1 SV=1
trembl
ID A0A067JBF6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05827 PE=4 SV=1
Gene Ontology
ID GO:0005739
description PREDICTED: uncharacterized protein LOC105650622

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19982: 49069-56605
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019962_030 0.0 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
2 Hb_000666_110 0.061909695 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
3 Hb_007007_050 0.0642588943 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
4 Hb_005535_050 0.0700605493 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
5 Hb_004722_060 0.0704229925 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]
6 Hb_001898_230 0.0723186298 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X2 [Jatropha curcas]
7 Hb_001504_150 0.0726208012 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
8 Hb_000141_060 0.073219285 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
9 Hb_000538_020 0.0778053519 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
10 Hb_002784_050 0.0785585356 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
11 Hb_000473_040 0.0841640008 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
12 Hb_022250_030 0.0849332133 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000265_150 0.0867367657 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
14 Hb_011794_090 0.0870657807 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
15 Hb_001348_070 0.0871475832 - - Uncharacterized protein isoform 1 [Theobroma cacao]
16 Hb_007164_020 0.0882271438 - - hypothetical protein glysoja_025872 [Glycine soja]
17 Hb_000905_190 0.0882781577 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
18 Hb_143766_090 0.0884136636 - - 60S ribosomal protein L31B [Hevea brasiliensis]
19 Hb_000000_160 0.0886359651 - - PREDICTED: membrin-11 [Jatropha curcas]
20 Hb_001511_020 0.0914068144 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]

Gene co-expression network

sample Hb_019962_030 Hb_019962_030 Hb_000666_110 Hb_000666_110 Hb_019962_030--Hb_000666_110 Hb_007007_050 Hb_007007_050 Hb_019962_030--Hb_007007_050 Hb_005535_050 Hb_005535_050 Hb_019962_030--Hb_005535_050 Hb_004722_060 Hb_004722_060 Hb_019962_030--Hb_004722_060 Hb_001898_230 Hb_001898_230 Hb_019962_030--Hb_001898_230 Hb_001504_150 Hb_001504_150 Hb_019962_030--Hb_001504_150 Hb_000666_110--Hb_001504_150 Hb_000141_060 Hb_000141_060 Hb_000666_110--Hb_000141_060 Hb_000538_020 Hb_000538_020 Hb_000666_110--Hb_000538_020 Hb_000905_190 Hb_000905_190 Hb_000666_110--Hb_000905_190 Hb_005503_030 Hb_005503_030 Hb_000666_110--Hb_005503_030 Hb_002292_010 Hb_002292_010 Hb_007007_050--Hb_002292_010 Hb_002687_140 Hb_002687_140 Hb_007007_050--Hb_002687_140 Hb_000808_250 Hb_000808_250 Hb_007007_050--Hb_000808_250 Hb_002784_050 Hb_002784_050 Hb_007007_050--Hb_002784_050 Hb_000359_330 Hb_000359_330 Hb_007007_050--Hb_000359_330 Hb_010128_130 Hb_010128_130 Hb_005535_050--Hb_010128_130 Hb_000473_040 Hb_000473_040 Hb_005535_050--Hb_000473_040 Hb_001369_650 Hb_001369_650 Hb_005535_050--Hb_001369_650 Hb_143766_090 Hb_143766_090 Hb_005535_050--Hb_143766_090 Hb_005332_070 Hb_005332_070 Hb_005535_050--Hb_005332_070 Hb_003688_100 Hb_003688_100 Hb_004722_060--Hb_003688_100 Hb_000265_150 Hb_000265_150 Hb_004722_060--Hb_000265_150 Hb_004722_060--Hb_000538_020 Hb_002495_070 Hb_002495_070 Hb_004722_060--Hb_002495_070 Hb_000621_080 Hb_000621_080 Hb_004722_060--Hb_000621_080 Hb_007164_020 Hb_007164_020 Hb_001898_230--Hb_007164_020 Hb_001511_020 Hb_001511_020 Hb_001898_230--Hb_001511_020 Hb_000089_220 Hb_000089_220 Hb_001898_230--Hb_000089_220 Hb_001898_230--Hb_000473_040 Hb_001898_230--Hb_007007_050 Hb_005701_040 Hb_005701_040 Hb_001504_150--Hb_005701_040 Hb_001504_150--Hb_007164_020 Hb_000205_120 Hb_000205_120 Hb_001504_150--Hb_000205_120 Hb_000085_240 Hb_000085_240 Hb_001504_150--Hb_000085_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
416.592 144.175 159.018 74.1874 334.102 293.969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
245.074 316.171 169.692 68.7316 49.165

CAGE analysis