Hb_019973_030

Information

Type -
Description -
Location Contig19973: 40834-42226
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019973_030 0.0 - - -
2 Hb_001452_140 0.1574705516 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
3 Hb_004226_020 0.1582712161 - - -
4 Hb_007245_090 0.1617896703 - - -
5 Hb_000014_100 0.1640893396 - - -
6 Hb_008376_010 0.165662505 - - -
7 Hb_001930_070 0.1670148934 - - -
8 Hb_004882_020 0.1712597554 - - -
9 Hb_034299_060 0.1714127837 transcription factor TF Family: Orphans PREDICTED: two-component response regulator ARR5 [Jatropha curcas]
10 Hb_001635_100 0.1756358604 - - PREDICTED: dentin sialophosphoprotein isoform X5 [Populus euphratica]
11 Hb_003151_050 0.1815682957 desease resistance Gene Name: MMR_HSR1 PREDICTED: uncharacterized protein LOC105639402 isoform X1 [Jatropha curcas]
12 Hb_001514_190 0.1816414692 - - -
13 Hb_001584_310 0.1826318671 - - hypothetical protein POPTR_0013s00630g [Populus trichocarpa]
14 Hb_004116_200 0.182856063 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
15 Hb_000138_040 0.1844697707 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
16 Hb_163145_020 0.1852833633 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
17 Hb_006499_010 0.1863378195 - - -
18 Hb_000665_040 0.1867040771 - - PREDICTED: stress response protein NST1-like [Jatropha curcas]
19 Hb_002007_310 0.1870002444 - - cyclin family protein [Populus trichocarpa]
20 Hb_004907_130 0.1880881617 - - -

Gene co-expression network

sample Hb_019973_030 Hb_019973_030 Hb_001452_140 Hb_001452_140 Hb_019973_030--Hb_001452_140 Hb_004226_020 Hb_004226_020 Hb_019973_030--Hb_004226_020 Hb_007245_090 Hb_007245_090 Hb_019973_030--Hb_007245_090 Hb_000014_100 Hb_000014_100 Hb_019973_030--Hb_000014_100 Hb_008376_010 Hb_008376_010 Hb_019973_030--Hb_008376_010 Hb_001930_070 Hb_001930_070 Hb_019973_030--Hb_001930_070 Hb_002387_020 Hb_002387_020 Hb_001452_140--Hb_002387_020 Hb_003751_110 Hb_003751_110 Hb_001452_140--Hb_003751_110 Hb_001452_140--Hb_004226_020 Hb_001584_310 Hb_001584_310 Hb_001452_140--Hb_001584_310 Hb_096962_020 Hb_096962_020 Hb_001452_140--Hb_096962_020 Hb_004968_100 Hb_004968_100 Hb_004226_020--Hb_004968_100 Hb_034299_060 Hb_034299_060 Hb_004226_020--Hb_034299_060 Hb_005357_150 Hb_005357_150 Hb_004226_020--Hb_005357_150 Hb_163145_020 Hb_163145_020 Hb_004226_020--Hb_163145_020 Hb_000429_170 Hb_000429_170 Hb_004226_020--Hb_000429_170 Hb_002973_080 Hb_002973_080 Hb_004226_020--Hb_002973_080 Hb_007245_090--Hb_000014_100 Hb_005214_110 Hb_005214_110 Hb_007245_090--Hb_005214_110 Hb_007245_090--Hb_001930_070 Hb_006499_010 Hb_006499_010 Hb_007245_090--Hb_006499_010 Hb_004882_020 Hb_004882_020 Hb_007245_090--Hb_004882_020 Hb_000339_070 Hb_000339_070 Hb_007245_090--Hb_000339_070 Hb_000014_100--Hb_006499_010 Hb_000014_100--Hb_001930_070 Hb_003747_240 Hb_003747_240 Hb_000014_100--Hb_003747_240 Hb_011716_040 Hb_011716_040 Hb_000014_100--Hb_011716_040 Hb_001158_030 Hb_001158_030 Hb_000014_100--Hb_001158_030 Hb_008376_010--Hb_000014_100 Hb_003125_050 Hb_003125_050 Hb_008376_010--Hb_003125_050 Hb_019153_040 Hb_019153_040 Hb_008376_010--Hb_019153_040 Hb_000958_010 Hb_000958_010 Hb_008376_010--Hb_000958_010 Hb_001514_190 Hb_001514_190 Hb_008376_010--Hb_001514_190 Hb_001930_070--Hb_006499_010 Hb_001186_060 Hb_001186_060 Hb_001930_070--Hb_001186_060 Hb_000033_050 Hb_000033_050 Hb_001930_070--Hb_000033_050 Hb_002924_050 Hb_002924_050 Hb_001930_070--Hb_002924_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.40601 0.745522 0.089406 0 1.79589 0.460609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.54214 0.808166 1.67432 0.658868 0.265008

CAGE analysis