Hb_020000_010

Information

Type -
Description -
Location Contig20000: 9354-16080
Sequence    

Annotation

kegg
ID vvi:100246386
description RNA-binding KH domain-containing-like
nr
ID XP_002274648.1
description PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
swissprot
ID Q9FKT4
description KH domain-containing protein At5g56140 OS=Arabidopsis thaliana GN=At5g56140 PE=2 SV=1
trembl
ID D7UAP0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g01210 PE=4 SV=1
Gene Ontology
ID GO:0003723
description kh domain-containing protein at5g56140-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20261: 11370-11698 , PASA_asmbl_20262: 11755-12521 , PASA_asmbl_20263: 12793-13020 , PASA_asmbl_20264: 13609-14017
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020000_010 0.0 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
2 Hb_024714_010 0.0490850305 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
3 Hb_024185_020 0.078671223 - - -
4 Hb_008554_070 0.0794027373 - - PREDICTED: peroxisome biogenesis protein 3-2 isoform X2 [Jatropha curcas]
5 Hb_001360_050 0.0806866805 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
6 Hb_011671_220 0.0814764209 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002759_060 0.0833173082 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
8 Hb_025240_040 0.0847385175 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
9 Hb_001083_020 0.0876051816 - - -
10 Hb_000230_540 0.0890477381 - - PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Sesamum indicum]
11 Hb_000329_310 0.0896020747 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
12 Hb_009838_080 0.0913735086 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
13 Hb_004109_190 0.0918157412 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
14 Hb_005092_060 0.0922666316 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
15 Hb_003964_100 0.0924091371 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
16 Hb_000170_010 0.0924914983 - - o-methyltransferase, putative [Ricinus communis]
17 Hb_127552_030 0.0932401807 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
18 Hb_004218_110 0.0934008978 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
19 Hb_002183_090 0.0942772495 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
20 Hb_002477_070 0.0948391445 - - Charged multivesicular body protein 2a, putative [Ricinus communis]

Gene co-expression network

sample Hb_020000_010 Hb_020000_010 Hb_024714_010 Hb_024714_010 Hb_020000_010--Hb_024714_010 Hb_024185_020 Hb_024185_020 Hb_020000_010--Hb_024185_020 Hb_008554_070 Hb_008554_070 Hb_020000_010--Hb_008554_070 Hb_001360_050 Hb_001360_050 Hb_020000_010--Hb_001360_050 Hb_011671_220 Hb_011671_220 Hb_020000_010--Hb_011671_220 Hb_002759_060 Hb_002759_060 Hb_020000_010--Hb_002759_060 Hb_024714_010--Hb_008554_070 Hb_002016_120 Hb_002016_120 Hb_024714_010--Hb_002016_120 Hb_006117_070 Hb_006117_070 Hb_024714_010--Hb_006117_070 Hb_025240_040 Hb_025240_040 Hb_024714_010--Hb_025240_040 Hb_024714_010--Hb_024185_020 Hb_000206_210 Hb_000206_210 Hb_024185_020--Hb_000206_210 Hb_004254_120 Hb_004254_120 Hb_024185_020--Hb_004254_120 Hb_003032_040 Hb_003032_040 Hb_024185_020--Hb_003032_040 Hb_026527_030 Hb_026527_030 Hb_024185_020--Hb_026527_030 Hb_009838_080 Hb_009838_080 Hb_024185_020--Hb_009838_080 Hb_000648_110 Hb_000648_110 Hb_024185_020--Hb_000648_110 Hb_008554_070--Hb_002016_120 Hb_001235_030 Hb_001235_030 Hb_008554_070--Hb_001235_030 Hb_008554_070--Hb_025240_040 Hb_011909_100 Hb_011909_100 Hb_008554_070--Hb_011909_100 Hb_004724_340 Hb_004724_340 Hb_001360_050--Hb_004724_340 Hb_001833_110 Hb_001833_110 Hb_001360_050--Hb_001833_110 Hb_002471_080 Hb_002471_080 Hb_001360_050--Hb_002471_080 Hb_005092_060 Hb_005092_060 Hb_001360_050--Hb_005092_060 Hb_001360_050--Hb_002759_060 Hb_012675_060 Hb_012675_060 Hb_001360_050--Hb_012675_060 Hb_005117_010 Hb_005117_010 Hb_011671_220--Hb_005117_010 Hb_000230_540 Hb_000230_540 Hb_011671_220--Hb_000230_540 Hb_004055_140 Hb_004055_140 Hb_011671_220--Hb_004055_140 Hb_010436_060 Hb_010436_060 Hb_011671_220--Hb_010436_060 Hb_002551_020 Hb_002551_020 Hb_011671_220--Hb_002551_020 Hb_004218_110 Hb_004218_110 Hb_002759_060--Hb_004218_110 Hb_002759_060--Hb_001833_110 Hb_027073_040 Hb_027073_040 Hb_002759_060--Hb_027073_040 Hb_003996_020 Hb_003996_020 Hb_002759_060--Hb_003996_020 Hb_002759_060--Hb_025240_040 Hb_000058_060 Hb_000058_060 Hb_002759_060--Hb_000058_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0657 4.09765 4.15924 6.36149 12.1583 22.1378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.9855 25.7312 21.0831 12.421 12.3685

CAGE analysis