Hb_020000_020

Information

Type -
Description -
Location Contig20000: 18653-23424
Sequence    

Annotation

kegg
ID rcu:RCOM_0169840
description Troponin C, skeletal muscle, putative
nr
ID XP_002532937.1
description Troponin C, skeletal muscle, putative [Ricinus communis]
swissprot
ID Q52K82
description Probable calcium-binding protein CML21 OS=Arabidopsis thaliana GN=CML21 PE=2 SV=1
trembl
ID B9T3W8
description Troponin C, skeletal muscle, putative OS=Ricinus communis GN=RCOM_0169840 PE=4 SV=1
Gene Ontology
ID GO:0005737
description probable calcium-binding protein cml21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20267: 18663-23357 , PASA_asmbl_20268: 18068-18919
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020000_020 0.0 - - Troponin C, skeletal muscle, putative [Ricinus communis]
2 Hb_023386_040 0.0658136253 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
3 Hb_000820_170 0.0670023167 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
4 Hb_003609_030 0.0716717695 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
5 Hb_000179_030 0.0720753855 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
6 Hb_004370_030 0.0721414318 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
7 Hb_154745_010 0.0738718836 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
8 Hb_006252_040 0.0773820533 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
9 Hb_002163_030 0.0785714022 - - PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform [Jatropha curcas]
10 Hb_004447_060 0.0808063767 - - PREDICTED: uncharacterized protein LOC105636329 isoform X2 [Jatropha curcas]
11 Hb_010193_050 0.0857345979 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005914_060 0.0865873126 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
13 Hb_002045_240 0.0877323656 - - 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis]
14 Hb_004096_030 0.088319785 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
15 Hb_165928_020 0.0887921768 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
16 Hb_000768_110 0.0897798327 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
17 Hb_001019_230 0.0904285522 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Jatropha curcas]
18 Hb_000544_090 0.0906903295 - - PREDICTED: golgin candidate 2 [Jatropha curcas]
19 Hb_000359_250 0.0911830321 - - PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial [Vitis vinifera]
20 Hb_005532_050 0.0919906406 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]

Gene co-expression network

sample Hb_020000_020 Hb_020000_020 Hb_023386_040 Hb_023386_040 Hb_020000_020--Hb_023386_040 Hb_000820_170 Hb_000820_170 Hb_020000_020--Hb_000820_170 Hb_003609_030 Hb_003609_030 Hb_020000_020--Hb_003609_030 Hb_000179_030 Hb_000179_030 Hb_020000_020--Hb_000179_030 Hb_004370_030 Hb_004370_030 Hb_020000_020--Hb_004370_030 Hb_154745_010 Hb_154745_010 Hb_020000_020--Hb_154745_010 Hb_023386_040--Hb_154745_010 Hb_000926_190 Hb_000926_190 Hb_023386_040--Hb_000926_190 Hb_006252_040 Hb_006252_040 Hb_023386_040--Hb_006252_040 Hb_005914_060 Hb_005914_060 Hb_023386_040--Hb_005914_060 Hb_023386_040--Hb_000179_030 Hb_003952_070 Hb_003952_070 Hb_023386_040--Hb_003952_070 Hb_000820_170--Hb_006252_040 Hb_003428_070 Hb_003428_070 Hb_000820_170--Hb_003428_070 Hb_016898_010 Hb_016898_010 Hb_000820_170--Hb_016898_010 Hb_005731_030 Hb_005731_030 Hb_000820_170--Hb_005731_030 Hb_000101_240 Hb_000101_240 Hb_000820_170--Hb_000101_240 Hb_123352_020 Hb_123352_020 Hb_000820_170--Hb_123352_020 Hb_005993_050 Hb_005993_050 Hb_003609_030--Hb_005993_050 Hb_000562_090 Hb_000562_090 Hb_003609_030--Hb_000562_090 Hb_001252_010 Hb_001252_010 Hb_003609_030--Hb_001252_010 Hb_031527_020 Hb_031527_020 Hb_003609_030--Hb_031527_020 Hb_003609_030--Hb_000179_030 Hb_000502_050 Hb_000502_050 Hb_003609_030--Hb_000502_050 Hb_006355_010 Hb_006355_010 Hb_000179_030--Hb_006355_010 Hb_008159_020 Hb_008159_020 Hb_000179_030--Hb_008159_020 Hb_000179_030--Hb_005914_060 Hb_001486_340 Hb_001486_340 Hb_000179_030--Hb_001486_340 Hb_000308_030 Hb_000308_030 Hb_000179_030--Hb_000308_030 Hb_002044_060 Hb_002044_060 Hb_004370_030--Hb_002044_060 Hb_010931_080 Hb_010931_080 Hb_004370_030--Hb_010931_080 Hb_004370_030--Hb_006252_040 Hb_026099_010 Hb_026099_010 Hb_004370_030--Hb_026099_010 Hb_002942_160 Hb_002942_160 Hb_004370_030--Hb_002942_160 Hb_000768_110 Hb_000768_110 Hb_004370_030--Hb_000768_110 Hb_002045_240 Hb_002045_240 Hb_154745_010--Hb_002045_240 Hb_000345_170 Hb_000345_170 Hb_154745_010--Hb_000345_170 Hb_001258_090 Hb_001258_090 Hb_154745_010--Hb_001258_090 Hb_110291_010 Hb_110291_010 Hb_154745_010--Hb_110291_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.627 33.5876 22.458 20.005 31.6185 72.0081
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.6471 32.9021 29.7369 27.0816 22.6714

CAGE analysis