Hb_020025_020

Information

Type -
Description -
Location Contig20025: 15465-17652
Sequence    

Annotation

kegg
ID pop:POPTR_0001s39130g
description POPTRDRAFT_829917; SENESCENCE-RELATED GENE 1 family protein
nr
ID XP_002300453.1
description SENESCENCE-RELATED GENE 1 family protein [Populus trichocarpa]
swissprot
ID Q39224
description Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1
trembl
ID B9GHE6
description SENESCENCE-RELATED GENE 1 family protein OS=Populus trichocarpa GN=POPTR_0001s39130g PE=3 SV=1
Gene Ontology
ID GO:0045431
description protein srg1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020025_020 0.0 - - SENESCENCE-RELATED GENE 1 family protein [Populus trichocarpa]
2 Hb_000589_280 0.0781978351 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
3 Hb_100786_010 0.0807787079 - - hypothetical protein B456_008G202600 [Gossypium raimondii]
4 Hb_010839_040 0.0827817591 - - hypothetical protein JCGZ_20868 [Jatropha curcas]
5 Hb_000462_100 0.0831892833 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
6 Hb_002835_030 0.0873998201 - - PREDICTED: lysM domain receptor-like kinase 4 [Vitis vinifera]
7 Hb_002758_020 0.0939235921 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
8 Hb_018709_010 0.0978004621 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
9 Hb_020141_020 0.0994945342 - - -
10 Hb_005464_040 0.1000279781 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000563_080 0.1011464701 - - -
12 Hb_000025_250 0.1050812884 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
13 Hb_166232_010 0.1073009224 - - hypothetical protein JCGZ_22831 [Jatropha curcas]
14 Hb_028013_010 0.1080345524 - - alcohol dehydrogenase, putative [Ricinus communis]
15 Hb_010358_010 0.1088282217 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
16 Hb_001301_020 0.1100408802 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
17 Hb_001930_060 0.1133330601 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
18 Hb_003188_020 0.1135750213 - - chitinase, putative [Ricinus communis]
19 Hb_032717_030 0.1147337374 - - PREDICTED: CASP-like protein 1B2 [Jatropha curcas]
20 Hb_002553_170 0.1176972832 - - PREDICTED: early nodulin-75-like [Jatropha curcas]

Gene co-expression network

sample Hb_020025_020 Hb_020025_020 Hb_000589_280 Hb_000589_280 Hb_020025_020--Hb_000589_280 Hb_100786_010 Hb_100786_010 Hb_020025_020--Hb_100786_010 Hb_010839_040 Hb_010839_040 Hb_020025_020--Hb_010839_040 Hb_000462_100 Hb_000462_100 Hb_020025_020--Hb_000462_100 Hb_002835_030 Hb_002835_030 Hb_020025_020--Hb_002835_030 Hb_002758_020 Hb_002758_020 Hb_020025_020--Hb_002758_020 Hb_000589_280--Hb_010839_040 Hb_000589_280--Hb_000462_100 Hb_000589_280--Hb_100786_010 Hb_000589_280--Hb_002835_030 Hb_000589_280--Hb_002758_020 Hb_005464_040 Hb_005464_040 Hb_000589_280--Hb_005464_040 Hb_018709_010 Hb_018709_010 Hb_100786_010--Hb_018709_010 Hb_100786_010--Hb_010839_040 Hb_020141_020 Hb_020141_020 Hb_100786_010--Hb_020141_020 Hb_100786_010--Hb_000462_100 Hb_100786_010--Hb_002835_030 Hb_010839_040--Hb_000462_100 Hb_010839_040--Hb_002835_030 Hb_010839_040--Hb_002758_020 Hb_166232_010 Hb_166232_010 Hb_010839_040--Hb_166232_010 Hb_000462_100--Hb_002835_030 Hb_000462_100--Hb_002758_020 Hb_000462_100--Hb_005464_040 Hb_002835_030--Hb_002758_020 Hb_002835_030--Hb_166232_010 Hb_002758_020--Hb_166232_010 Hb_000563_080 Hb_000563_080 Hb_002758_020--Hb_000563_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.499888 0 0.224704 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.136065 10.3691 0

CAGE analysis