Hb_020025_040

Information

Type -
Description -
Location Contig20025: 26954-29783
Sequence    

Annotation

kegg
ID rcu:RCOM_0494130
description sodium-bile acid cotransporter, putative
nr
ID XP_002531245.1
description sodium-bile acid cotransporter, putative [Ricinus communis]
swissprot
ID Q93YR2
description Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Arabidopsis thaliana GN=BASS1 PE=2 SV=1
trembl
ID B9SZ26
description Sodium-bile acid cotransporter, putative OS=Ricinus communis GN=RCOM_0494130 PE=4 SV=1
Gene Ontology
ID GO:0009941
description probable sodium metabolite cotransporter chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20277: 26890-27460 , PASA_asmbl_20278: 27522-28526 , PASA_asmbl_20279: 27522-29176 , PASA_asmbl_20280: 29526-29652
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020025_040 0.0 - - sodium-bile acid cotransporter, putative [Ricinus communis]
2 Hb_000236_040 0.0882086887 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
3 Hb_002228_070 0.0885644738 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]
4 Hb_010098_050 0.0899142632 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
5 Hb_022250_060 0.0912827257 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like isoform X1 [Jatropha curcas]
6 Hb_002217_350 0.0933905734 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
7 Hb_006615_240 0.0951458869 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
8 Hb_003304_020 0.0966203921 - - Polyadenylate-binding protein RBP47C [Glycine soja]
9 Hb_007044_120 0.0972422244 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
10 Hb_002014_020 0.0979978208 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
11 Hb_001300_150 0.0980401588 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
12 Hb_000827_050 0.0984914619 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
13 Hb_021068_040 0.0990604847 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
14 Hb_019280_050 0.1001526842 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 [Jatropha curcas]
15 Hb_000460_030 0.1011872449 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
16 Hb_000483_260 0.1015942671 - - PREDICTED: dihydroorotase, mitochondrial isoform X1 [Populus euphratica]
17 Hb_004058_030 0.1021744908 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
18 Hb_003362_030 0.102244662 - - hypothetical protein POPTR_0017s08440g [Populus trichocarpa]
19 Hb_004109_170 0.1024993492 - - PREDICTED: probable ribokinase [Jatropha curcas]
20 Hb_000768_090 0.1026542244 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_020025_040 Hb_020025_040 Hb_000236_040 Hb_000236_040 Hb_020025_040--Hb_000236_040 Hb_002228_070 Hb_002228_070 Hb_020025_040--Hb_002228_070 Hb_010098_050 Hb_010098_050 Hb_020025_040--Hb_010098_050 Hb_022250_060 Hb_022250_060 Hb_020025_040--Hb_022250_060 Hb_002217_350 Hb_002217_350 Hb_020025_040--Hb_002217_350 Hb_006615_240 Hb_006615_240 Hb_020025_040--Hb_006615_240 Hb_000827_050 Hb_000827_050 Hb_000236_040--Hb_000827_050 Hb_000205_090 Hb_000205_090 Hb_000236_040--Hb_000205_090 Hb_001633_050 Hb_001633_050 Hb_000236_040--Hb_001633_050 Hb_002014_020 Hb_002014_020 Hb_000236_040--Hb_002014_020 Hb_003304_020 Hb_003304_020 Hb_000236_040--Hb_003304_020 Hb_004058_030 Hb_004058_030 Hb_000236_040--Hb_004058_030 Hb_000402_160 Hb_000402_160 Hb_002228_070--Hb_000402_160 Hb_000302_140 Hb_000302_140 Hb_002228_070--Hb_000302_140 Hb_001096_090 Hb_001096_090 Hb_002228_070--Hb_001096_090 Hb_001341_150 Hb_001341_150 Hb_002228_070--Hb_001341_150 Hb_002228_070--Hb_010098_050 Hb_010098_050--Hb_006615_240 Hb_010098_050--Hb_001341_150 Hb_010098_050--Hb_000205_090 Hb_019280_050 Hb_019280_050 Hb_010098_050--Hb_019280_050 Hb_000431_170 Hb_000431_170 Hb_010098_050--Hb_000431_170 Hb_008013_050 Hb_008013_050 Hb_010098_050--Hb_008013_050 Hb_007317_010 Hb_007317_010 Hb_022250_060--Hb_007317_010 Hb_000221_190 Hb_000221_190 Hb_022250_060--Hb_000221_190 Hb_000926_090 Hb_000926_090 Hb_022250_060--Hb_000926_090 Hb_004162_130 Hb_004162_130 Hb_022250_060--Hb_004162_130 Hb_002217_020 Hb_002217_020 Hb_022250_060--Hb_002217_020 Hb_000393_020 Hb_000393_020 Hb_022250_060--Hb_000393_020 Hb_000853_150 Hb_000853_150 Hb_002217_350--Hb_000853_150 Hb_000783_010 Hb_000783_010 Hb_002217_350--Hb_000783_010 Hb_000483_260 Hb_000483_260 Hb_002217_350--Hb_000483_260 Hb_002205_090 Hb_002205_090 Hb_002217_350--Hb_002205_090 Hb_002217_350--Hb_003304_020 Hb_000720_040 Hb_000720_040 Hb_002217_350--Hb_000720_040 Hb_003582_060 Hb_003582_060 Hb_006615_240--Hb_003582_060 Hb_000390_300 Hb_000390_300 Hb_006615_240--Hb_000390_300 Hb_004109_170 Hb_004109_170 Hb_006615_240--Hb_004109_170 Hb_000003_230 Hb_000003_230 Hb_006615_240--Hb_000003_230 Hb_006615_240--Hb_001341_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.66076 1.62269 3.52209 2.31745 1.30337 2.05211
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.38809 3.78047 3.92064 2.66317 1.13357

CAGE analysis