Hb_020035_020

Information

Type -
Description -
Location Contig20035: 27927-28265
Sequence    

Annotation

kegg
ID rcu:RCOM_1589290
description hypothetical protein
nr
ID XP_012068402.1
description PREDICTED: uncharacterized protein LOC105631020 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16094 PE=4 SV=1
Gene Ontology
ID GO:0005488
description protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020035_020 0.0 - - PREDICTED: uncharacterized protein LOC105631020 [Jatropha curcas]
2 Hb_000656_340 0.122422733 - - hypothetical protein JCGZ_24686 [Jatropha curcas]
3 Hb_042710_010 0.1224377169 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
4 Hb_006995_040 0.1430761302 - - PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]
5 Hb_001610_130 0.1481107671 - - 40S ribosomal protein S30 [Medicago truncatula]
6 Hb_000419_130 0.1503406291 - - PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]
7 Hb_000493_010 0.1528340924 - - hypothetical protein CICLE_v10021431mg [Citrus clementina]
8 Hb_012305_120 0.1548430879 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
9 Hb_014834_040 0.1579415124 - - hypothetical protein JCGZ_03409 [Jatropha curcas]
10 Hb_023732_060 0.1656027486 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
11 Hb_001296_030 0.1693601419 - - PREDICTED: uncharacterized protein LOC105638276 [Jatropha curcas]
12 Hb_182964_010 0.1826686512 - - PREDICTED: uncharacterized protein LOC105642044 isoform X2 [Jatropha curcas]
13 Hb_000258_030 0.1850148921 - - -
14 Hb_004421_020 0.1859770575 - - -
15 Hb_001057_050 0.1859917575 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
16 Hb_009659_020 0.1863082818 - - PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
17 Hb_140543_010 0.1866229412 - - -
18 Hb_007594_090 0.186957356 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
19 Hb_014834_140 0.1877841026 - - Uncharacterized protein TCM_015942 [Theobroma cacao]
20 Hb_008511_110 0.1881237174 - - PREDICTED: uncharacterized protein LOC105134715 [Populus euphratica]

Gene co-expression network

sample Hb_020035_020 Hb_020035_020 Hb_000656_340 Hb_000656_340 Hb_020035_020--Hb_000656_340 Hb_042710_010 Hb_042710_010 Hb_020035_020--Hb_042710_010 Hb_006995_040 Hb_006995_040 Hb_020035_020--Hb_006995_040 Hb_001610_130 Hb_001610_130 Hb_020035_020--Hb_001610_130 Hb_000419_130 Hb_000419_130 Hb_020035_020--Hb_000419_130 Hb_000493_010 Hb_000493_010 Hb_020035_020--Hb_000493_010 Hb_023732_060 Hb_023732_060 Hb_000656_340--Hb_023732_060 Hb_140543_010 Hb_140543_010 Hb_000656_340--Hb_140543_010 Hb_000656_340--Hb_006995_040 Hb_130235_010 Hb_130235_010 Hb_000656_340--Hb_130235_010 Hb_000656_340--Hb_000419_130 Hb_001296_030 Hb_001296_030 Hb_042710_010--Hb_001296_030 Hb_042710_010--Hb_000419_130 Hb_042710_010--Hb_000493_010 Hb_007594_090 Hb_007594_090 Hb_042710_010--Hb_007594_090 Hb_042710_010--Hb_001610_130 Hb_182964_010 Hb_182964_010 Hb_006995_040--Hb_182964_010 Hb_000215_200 Hb_000215_200 Hb_006995_040--Hb_000215_200 Hb_002284_050 Hb_002284_050 Hb_006995_040--Hb_002284_050 Hb_000710_070 Hb_000710_070 Hb_006995_040--Hb_000710_070 Hb_014834_140 Hb_014834_140 Hb_006995_040--Hb_014834_140 Hb_001610_130--Hb_000419_130 Hb_001575_030 Hb_001575_030 Hb_001610_130--Hb_001575_030 Hb_003058_220 Hb_003058_220 Hb_001610_130--Hb_003058_220 Hb_005224_050 Hb_005224_050 Hb_001610_130--Hb_005224_050 Hb_003226_220 Hb_003226_220 Hb_001610_130--Hb_003226_220 Hb_001610_130--Hb_014834_140 Hb_001769_100 Hb_001769_100 Hb_000419_130--Hb_001769_100 Hb_000419_130--Hb_003058_220 Hb_011161_050 Hb_011161_050 Hb_000419_130--Hb_011161_050 Hb_001085_010 Hb_001085_010 Hb_000419_130--Hb_001085_010 Hb_000199_070 Hb_000199_070 Hb_000419_130--Hb_000199_070 Hb_000648_030 Hb_000648_030 Hb_000493_010--Hb_000648_030 Hb_000493_010--Hb_001296_030 Hb_000672_120 Hb_000672_120 Hb_000493_010--Hb_000672_120 Hb_000493_010--Hb_000419_130 Hb_007317_060 Hb_007317_060 Hb_000493_010--Hb_007317_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.1161 1.13041 1.85305 9.82632 0.803518 21.4211
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.9494 21.1561 6.97274 5.63423 0.362635

CAGE analysis