Hb_020094_020

Information

Type -
Description -
Location Contig20094: 4596-5066
Sequence    

Annotation

kegg
ID pxb:103927502
description 17.1 kDa class II heat shock protein-like
nr
ID XP_009334702.1
description PREDICTED: 17.1 kDa class II heat shock protein-like [Pyrus x bretschneideri]
swissprot
ID P05477
description 17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1
trembl
ID Q9XGS6
description Cytosolic class II low molecular weight heat shock protein OS=Prunus dulcis GN=hsp17.5 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20413: 4503-5205
cDNA
(Sanger)
(ID:Location)		 009_P04.ab1: 4503-5186 , 028_H06.ab1: 4518-5186

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020094_020 0.0 - - PREDICTED: 17.1 kDa class II heat shock protein-like [Pyrus x bretschneideri]
2 Hb_001235_100 0.1428813767 - - heat-shock protein, putative [Ricinus communis]
3 Hb_010020_010 0.1579277823 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
4 Hb_002843_220 0.1844067857 - - PREDICTED: small heat shock protein, chloroplastic [Jatropha curcas]
5 Hb_000062_110 0.1858315379 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
6 Hb_004296_010 0.1924189338 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
7 Hb_000302_300 0.1977611606 - - PREDICTED: heat shock protein 83 [Populus euphratica]
8 Hb_000488_010 0.1984405435 - - 18.1 kDa class I heat shock protein [Jatropha curcas]
9 Hb_006573_010 0.2054627191 - - heat shock protein [Hevea brasiliensis]
10 Hb_000941_140 0.2124774815 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
11 Hb_007257_010 0.2139406263 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
12 Hb_006618_040 0.2174852749 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
13 Hb_010407_190 0.2194050632 - - phosphate transporter [Manihot esculenta]
14 Hb_006721_070 0.225006732 - - PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Jatropha curcas]
15 Hb_001369_370 0.2258498433 - - PREDICTED: 23.6 kDa heat shock protein, mitochondrial [Jatropha curcas]
16 Hb_020247_050 0.2290895175 - - PREDICTED: 18.1 kDa class I heat shock protein-like [Populus euphratica]
17 Hb_001766_040 0.2310448737 - - chaperone clpb, putative [Ricinus communis]
18 Hb_000483_180 0.2381062618 - - -
19 Hb_010174_210 0.2389434529 - - PREDICTED: small heat shock protein, chloroplastic-like isoform X1 [Jatropha curcas]
20 Hb_012753_040 0.2434170195 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_020094_020 Hb_020094_020 Hb_001235_100 Hb_001235_100 Hb_020094_020--Hb_001235_100 Hb_010020_010 Hb_010020_010 Hb_020094_020--Hb_010020_010 Hb_002843_220 Hb_002843_220 Hb_020094_020--Hb_002843_220 Hb_000062_110 Hb_000062_110 Hb_020094_020--Hb_000062_110 Hb_004296_010 Hb_004296_010 Hb_020094_020--Hb_004296_010 Hb_000302_300 Hb_000302_300 Hb_020094_020--Hb_000302_300 Hb_001235_100--Hb_000062_110 Hb_001369_370 Hb_001369_370 Hb_001235_100--Hb_001369_370 Hb_000483_180 Hb_000483_180 Hb_001235_100--Hb_000483_180 Hb_005962_010 Hb_005962_010 Hb_001235_100--Hb_005962_010 Hb_000488_010 Hb_000488_010 Hb_001235_100--Hb_000488_010 Hb_010020_010--Hb_000062_110 Hb_010020_010--Hb_004296_010 Hb_010020_010--Hb_001369_370 Hb_010174_210 Hb_010174_210 Hb_010020_010--Hb_010174_210 Hb_010407_190 Hb_010407_190 Hb_010020_010--Hb_010407_190 Hb_002843_220--Hb_000302_300 Hb_020247_050 Hb_020247_050 Hb_002843_220--Hb_020247_050 Hb_000796_050 Hb_000796_050 Hb_002843_220--Hb_000796_050 Hb_006721_070 Hb_006721_070 Hb_002843_220--Hb_006721_070 Hb_006573_010 Hb_006573_010 Hb_002843_220--Hb_006573_010 Hb_001766_040 Hb_001766_040 Hb_000062_110--Hb_001766_040 Hb_000941_140 Hb_000941_140 Hb_000062_110--Hb_000941_140 Hb_006618_040 Hb_006618_040 Hb_000062_110--Hb_006618_040 Hb_000062_110--Hb_001369_370 Hb_011344_020 Hb_011344_020 Hb_000062_110--Hb_011344_020 Hb_019516_030 Hb_019516_030 Hb_000062_110--Hb_019516_030 Hb_004296_010--Hb_000941_140 Hb_004296_010--Hb_006618_040 Hb_000260_370 Hb_000260_370 Hb_004296_010--Hb_000260_370 Hb_001269_310 Hb_001269_310 Hb_004296_010--Hb_001269_310 Hb_002999_060 Hb_002999_060 Hb_004296_010--Hb_002999_060 Hb_013394_060 Hb_013394_060 Hb_004296_010--Hb_013394_060 Hb_021254_010 Hb_021254_010 Hb_000302_300--Hb_021254_010 Hb_000302_300--Hb_006573_010 Hb_000302_300--Hb_020247_050 Hb_000631_140 Hb_000631_140 Hb_000302_300--Hb_000631_140 Hb_000991_050 Hb_000991_050 Hb_000302_300--Hb_000991_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
81.9405 539.338 66.6152 92.7441 659.424 117.483
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
96.5597 65.8302 42.6702 7.89471 338.482

CAGE analysis