Hb_020111_010

Information

Type -
Description -
Location Contig20111: 8987-11093
Sequence    

Annotation

kegg
ID gmx:102661177
description uncharacterized LOC102661177
nr
ID XP_006598445.1
description PREDICTED: uncharacterized protein LOC102661177 [Glycine max]
swissprot
ID -
description -
trembl
ID Q53JJ4
description Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Oryza sativa subsp. japonica GN=LOC_Os11g12850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020111_010 0.0 - - PREDICTED: uncharacterized protein LOC102661177 [Glycine max]
2 Hb_004147_050 0.0041423818 - - hypothetical protein JCGZ_03640 [Jatropha curcas]
3 Hb_001013_020 0.0498951776 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011010_010 0.0653456723 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_011639_140 0.0656895795 transcription factor TF Family: M-type hypothetical protein JCGZ_09931 [Jatropha curcas]
6 Hb_003506_060 0.0670897986 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
7 Hb_000640_010 0.0675735094 - - PREDICTED: histidine kinase CKI1 [Jatropha curcas]
8 Hb_002659_100 0.0717241186 - - hypothetical protein OsI_37193 [Oryza sativa Indica Group]
9 Hb_111985_020 0.0732276746 - - -
10 Hb_006642_010 0.1286884139 - - -
11 Hb_003147_030 0.1973402723 transcription factor TF Family: Jumonji transcription factor, putative [Ricinus communis]
12 Hb_138358_010 0.1975696359 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
13 Hb_004642_010 0.1979256648 - - Integrase core domain, putative [Oryza sativa Japonica Group]
14 Hb_000270_570 0.2004272778 - - PREDICTED: peroxidase 65-like [Jatropha curcas]
15 Hb_004724_110 0.201405402 - - alpha-1,2-fucosyltransferase [Populus tremula x Populus alba]
16 Hb_000922_230 0.2047070805 - - -
17 Hb_001768_030 0.2064466167 - - -
18 Hb_001827_020 0.2103206877 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_011269_050 0.2110861122 - - -
20 Hb_077421_010 0.2129414352 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]

Gene co-expression network

sample Hb_020111_010 Hb_020111_010 Hb_004147_050 Hb_004147_050 Hb_020111_010--Hb_004147_050 Hb_001013_020 Hb_001013_020 Hb_020111_010--Hb_001013_020 Hb_011010_010 Hb_011010_010 Hb_020111_010--Hb_011010_010 Hb_011639_140 Hb_011639_140 Hb_020111_010--Hb_011639_140 Hb_003506_060 Hb_003506_060 Hb_020111_010--Hb_003506_060 Hb_000640_010 Hb_000640_010 Hb_020111_010--Hb_000640_010 Hb_004147_050--Hb_001013_020 Hb_004147_050--Hb_003506_060 Hb_004147_050--Hb_011010_010 Hb_004147_050--Hb_011639_140 Hb_004147_050--Hb_000640_010 Hb_001013_020--Hb_011010_010 Hb_001013_020--Hb_011639_140 Hb_001013_020--Hb_000640_010 Hb_002659_100 Hb_002659_100 Hb_001013_020--Hb_002659_100 Hb_111985_020 Hb_111985_020 Hb_001013_020--Hb_111985_020 Hb_011010_010--Hb_011639_140 Hb_011010_010--Hb_000640_010 Hb_011010_010--Hb_002659_100 Hb_011010_010--Hb_111985_020 Hb_006642_010 Hb_006642_010 Hb_011010_010--Hb_006642_010 Hb_011639_140--Hb_000640_010 Hb_011639_140--Hb_002659_100 Hb_011639_140--Hb_111985_020 Hb_011639_140--Hb_006642_010 Hb_003506_060--Hb_001013_020 Hb_003506_060--Hb_011010_010 Hb_003506_060--Hb_011639_140 Hb_003506_060--Hb_000640_010 Hb_000640_010--Hb_002659_100 Hb_000640_010--Hb_111985_020 Hb_000640_010--Hb_006642_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0321253 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00815461 0

CAGE analysis