Hb_020141_030

Information

Type -
Description -
Location Contig20141: 9044-19035
Sequence    

Annotation

kegg
ID rcu:RCOM_1182760
description solanesyl diphosphate synthase, putative (EC:2.5.1.30)
nr
ID XP_002528488.1
description solanesyl diphosphate synthase, putative [Ricinus communis]
swissprot
ID Q8S948
description Solanesyl diphosphate synthase 1 OS=Arabidopsis thaliana GN=SPS1 PE=1 SV=1
trembl
ID B9SR69
description Solanesyl diphosphate synthase, putative OS=Ricinus communis GN=RCOM_1182760 PE=3 SV=1
Gene Ontology
ID GO:0036422
description solanesyl diphosphate synthase 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20475: 9059-9513 , PASA_asmbl_20477: 18022-18561 , PASA_asmbl_20478: 18795-18972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020141_030 0.0 - - solanesyl diphosphate synthase, putative [Ricinus communis]
2 Hb_000208_270 0.0850743713 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
3 Hb_000787_210 0.0933143133 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001541_280 0.1004823039 - - phosphate transporter [Manihot esculenta]
5 Hb_003018_150 0.1025731249 - - PREDICTED: uncharacterized protein LOC105628869 [Jatropha curcas]
6 Hb_002814_010 0.1081370658 - - PREDICTED: adenylate kinase 5, chloroplastic [Jatropha curcas]
7 Hb_003058_170 0.1106183478 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
8 Hb_000002_300 0.1129106542 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
9 Hb_000847_030 0.1133891155 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
10 Hb_001252_030 0.1149436873 - - Serine/threonine-protein kinase Nek8, putative [Ricinus communis]
11 Hb_000103_230 0.1168405514 - - PREDICTED: chlorophyllase-2, chloroplastic [Jatropha curcas]
12 Hb_016924_010 0.1179157269 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002636_070 0.118987282 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
14 Hb_002713_060 0.119443541 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
15 Hb_004934_130 0.1196170388 - - 12-oxophytodienoate reductase 2 isoform 1 [Theobroma cacao]
16 Hb_000056_110 0.1208178072 - - PREDICTED: uncharacterized protein LOC105630405 [Jatropha curcas]
17 Hb_001014_020 0.1220113281 - - gene GA family protein [Populus trichocarpa]
18 Hb_022693_080 0.1234115211 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
19 Hb_000618_110 0.1246743816 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
20 Hb_003849_070 0.1248141564 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]

Gene co-expression network

sample Hb_020141_030 Hb_020141_030 Hb_000208_270 Hb_000208_270 Hb_020141_030--Hb_000208_270 Hb_000787_210 Hb_000787_210 Hb_020141_030--Hb_000787_210 Hb_001541_280 Hb_001541_280 Hb_020141_030--Hb_001541_280 Hb_003018_150 Hb_003018_150 Hb_020141_030--Hb_003018_150 Hb_002814_010 Hb_002814_010 Hb_020141_030--Hb_002814_010 Hb_003058_170 Hb_003058_170 Hb_020141_030--Hb_003058_170 Hb_010098_040 Hb_010098_040 Hb_000208_270--Hb_010098_040 Hb_000208_270--Hb_000787_210 Hb_000538_300 Hb_000538_300 Hb_000208_270--Hb_000538_300 Hb_000966_040 Hb_000966_040 Hb_000208_270--Hb_000966_040 Hb_000208_270--Hb_002814_010 Hb_000103_230 Hb_000103_230 Hb_000787_210--Hb_000103_230 Hb_000056_110 Hb_000056_110 Hb_000787_210--Hb_000056_110 Hb_034507_050 Hb_034507_050 Hb_000787_210--Hb_034507_050 Hb_001252_030 Hb_001252_030 Hb_000787_210--Hb_001252_030 Hb_000270_640 Hb_000270_640 Hb_001541_280--Hb_000270_640 Hb_000847_030 Hb_000847_030 Hb_001541_280--Hb_000847_030 Hb_001541_280--Hb_002814_010 Hb_000140_460 Hb_000140_460 Hb_001541_280--Hb_000140_460 Hb_000002_300 Hb_000002_300 Hb_001541_280--Hb_000002_300 Hb_003018_150--Hb_000847_030 Hb_005914_160 Hb_005914_160 Hb_003018_150--Hb_005914_160 Hb_001210_060 Hb_001210_060 Hb_003018_150--Hb_001210_060 Hb_003018_150--Hb_003058_170 Hb_000618_110 Hb_000618_110 Hb_003018_150--Hb_000618_110 Hb_004934_130 Hb_004934_130 Hb_002814_010--Hb_004934_130 Hb_000679_320 Hb_000679_320 Hb_002814_010--Hb_000679_320 Hb_000359_160 Hb_000359_160 Hb_002814_010--Hb_000359_160 Hb_000076_060 Hb_000076_060 Hb_003058_170--Hb_000076_060 Hb_002713_060 Hb_002713_060 Hb_003058_170--Hb_002713_060 Hb_003058_170--Hb_001210_060 Hb_003058_170--Hb_000847_030 Hb_029223_010 Hb_029223_010 Hb_003058_170--Hb_029223_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.244797 6.50653 11.7812 14.7024 0.628096 0.659188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.670733 0.461746 0.497472 2.51576 31.7231

CAGE analysis