Hb_020141_040

Information

Type transcription factor
Description TF Family: STAT
Location Contig20141: 24985-36083
Sequence    

Annotation

kegg
ID rcu:RCOM_1182710
description hypothetical protein
nr
ID XP_002528483.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SR64
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1182710 PE=4 SV=1
Gene Ontology
ID GO:0005634
description sh2 domain protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20480: 28715-28852 , PASA_asmbl_20482: 29545-31767 , PASA_asmbl_20483: 31835-32041 , PASA_asmbl_20484: 34555-35134
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020141_040 0.0 transcription factor TF Family: STAT conserved hypothetical protein [Ricinus communis]
2 Hb_103747_020 0.0694008216 - - calcium dependent protein kinase, partial [Hevea brasiliensis]
3 Hb_000589_190 0.0713626821 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
4 Hb_002014_040 0.0771936825 - - site-1 protease, putative [Ricinus communis]
5 Hb_000130_420 0.082386472 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
6 Hb_025668_010 0.0824009593 - - unnamed protein product [Coffea canephora]
7 Hb_002942_210 0.0858803866 - - alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]
8 Hb_027654_020 0.0874546436 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]
9 Hb_000317_510 0.0892385676 - - PREDICTED: long chain base biosynthesis protein 1 [Jatropha curcas]
10 Hb_000362_170 0.0901074087 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
11 Hb_007800_020 0.0912635144 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
12 Hb_006022_010 0.0917754057 - - PREDICTED: uncharacterized protein LOC105628883 [Jatropha curcas]
13 Hb_000300_550 0.0926516481 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
14 Hb_005895_010 0.0948291376 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
15 Hb_002473_050 0.0959273864 - - catalytic, putative [Ricinus communis]
16 Hb_004631_150 0.0979400084 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
17 Hb_001002_060 0.0981544087 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
18 Hb_007597_010 0.0986896484 - - hypothetical protein B456_010G072300 [Gossypium raimondii]
19 Hb_023313_040 0.098770916 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
20 Hb_000635_040 0.0999874417 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]

Gene co-expression network

sample Hb_020141_040 Hb_020141_040 Hb_103747_020 Hb_103747_020 Hb_020141_040--Hb_103747_020 Hb_000589_190 Hb_000589_190 Hb_020141_040--Hb_000589_190 Hb_002014_040 Hb_002014_040 Hb_020141_040--Hb_002014_040 Hb_000130_420 Hb_000130_420 Hb_020141_040--Hb_000130_420 Hb_025668_010 Hb_025668_010 Hb_020141_040--Hb_025668_010 Hb_002942_210 Hb_002942_210 Hb_020141_040--Hb_002942_210 Hb_000317_510 Hb_000317_510 Hb_103747_020--Hb_000317_510 Hb_103747_020--Hb_002014_040 Hb_002686_040 Hb_002686_040 Hb_103747_020--Hb_002686_040 Hb_005723_020 Hb_005723_020 Hb_103747_020--Hb_005723_020 Hb_000610_040 Hb_000610_040 Hb_103747_020--Hb_000610_040 Hb_008226_090 Hb_008226_090 Hb_103747_020--Hb_008226_090 Hb_008921_010 Hb_008921_010 Hb_000589_190--Hb_008921_010 Hb_000589_190--Hb_000317_510 Hb_000589_190--Hb_103747_020 Hb_000994_020 Hb_000994_020 Hb_000589_190--Hb_000994_020 Hb_000589_190--Hb_002942_210 Hb_000362_170 Hb_000362_170 Hb_002014_040--Hb_000362_170 Hb_011972_020 Hb_011972_020 Hb_002014_040--Hb_011972_020 Hb_010272_010 Hb_010272_010 Hb_002014_040--Hb_010272_010 Hb_002014_040--Hb_008226_090 Hb_005895_010 Hb_005895_010 Hb_002014_040--Hb_005895_010 Hb_004912_030 Hb_004912_030 Hb_000130_420--Hb_004912_030 Hb_000130_420--Hb_000362_170 Hb_000635_040 Hb_000635_040 Hb_000130_420--Hb_000635_040 Hb_000130_420--Hb_011972_020 Hb_000130_420--Hb_002014_040 Hb_000238_040 Hb_000238_040 Hb_000130_420--Hb_000238_040 Hb_023313_040 Hb_023313_040 Hb_025668_010--Hb_023313_040 Hb_001002_060 Hb_001002_060 Hb_025668_010--Hb_001002_060 Hb_004096_060 Hb_004096_060 Hb_025668_010--Hb_004096_060 Hb_005730_010 Hb_005730_010 Hb_025668_010--Hb_005730_010 Hb_025668_010--Hb_002942_210 Hb_000261_210 Hb_000261_210 Hb_025668_010--Hb_000261_210 Hb_002942_210--Hb_002014_040 Hb_139002_010 Hb_139002_010 Hb_002942_210--Hb_139002_010 Hb_002942_210--Hb_008921_010 Hb_000847_080 Hb_000847_080 Hb_002942_210--Hb_000847_080 Hb_001931_030 Hb_001931_030 Hb_002942_210--Hb_001931_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.3745 5.41042 7.78752 6.41076 6.05367 4.03776
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.0582 1.97579 2.92378 3.23842 4.39118

CAGE analysis