Hb_020178_040

Information

Type -
Description -
Location Contig20178: 23137-29207
Sequence    

Annotation

kegg
ID rcu:RCOM_1591950
description hypothetical protein
nr
ID XP_002510277.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9CAD5
description Mitogen-activated protein kinase kinase kinase YODA OS=Arabidopsis thaliana GN=YDA PE=1 SV=1
trembl
ID B9R7I4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1591950 PE=4 SV=1
Gene Ontology
ID GO:0000166
description mitogen-activated protein kinase kinase kinase yoda-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20522: 23209-28844 , PASA_asmbl_20523: 27036-27284
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020178_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002272_030 0.0375054593 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
3 Hb_002042_050 0.0525924528 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
4 Hb_001723_100 0.0605115399 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
5 Hb_002071_070 0.0700329333 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
6 Hb_000243_260 0.0727184439 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
7 Hb_000347_400 0.0732243001 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
8 Hb_008748_030 0.0740939404 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002830_010 0.0749442257 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
10 Hb_004030_080 0.0764823921 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
11 Hb_066920_030 0.0772610527 - - PREDICTED: adagio protein 1 [Jatropha curcas]
12 Hb_007839_020 0.077281399 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002471_090 0.0785083414 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
14 Hb_006452_120 0.0785126499 - - PREDICTED: protein FAM188A [Jatropha curcas]
15 Hb_008279_040 0.079078557 - - Rer1 family protein isoform 2 [Theobroma cacao]
16 Hb_000227_160 0.0793167094 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
17 Hb_000567_230 0.0795899539 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
18 Hb_001404_110 0.0806747185 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
19 Hb_003688_180 0.0809479009 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
20 Hb_003607_130 0.0811683649 - - serine/threonine protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_020178_040 Hb_020178_040 Hb_002272_030 Hb_002272_030 Hb_020178_040--Hb_002272_030 Hb_002042_050 Hb_002042_050 Hb_020178_040--Hb_002042_050 Hb_001723_100 Hb_001723_100 Hb_020178_040--Hb_001723_100 Hb_002071_070 Hb_002071_070 Hb_020178_040--Hb_002071_070 Hb_000243_260 Hb_000243_260 Hb_020178_040--Hb_000243_260 Hb_000347_400 Hb_000347_400 Hb_020178_040--Hb_000347_400 Hb_002272_030--Hb_002042_050 Hb_000567_230 Hb_000567_230 Hb_002272_030--Hb_000567_230 Hb_002272_030--Hb_001723_100 Hb_002830_010 Hb_002830_010 Hb_002272_030--Hb_002830_010 Hb_009288_010 Hb_009288_010 Hb_002272_030--Hb_009288_010 Hb_002042_050--Hb_000243_260 Hb_006100_020 Hb_006100_020 Hb_002042_050--Hb_006100_020 Hb_002042_050--Hb_000567_230 Hb_001817_170 Hb_001817_170 Hb_002042_050--Hb_001817_170 Hb_066920_030 Hb_066920_030 Hb_001723_100--Hb_066920_030 Hb_001404_110 Hb_001404_110 Hb_001723_100--Hb_001404_110 Hb_002631_210 Hb_002631_210 Hb_001723_100--Hb_002631_210 Hb_001723_100--Hb_000347_400 Hb_000856_040 Hb_000856_040 Hb_002071_070--Hb_000856_040 Hb_002071_070--Hb_002042_050 Hb_003058_260 Hb_003058_260 Hb_002071_070--Hb_003058_260 Hb_002890_130 Hb_002890_130 Hb_002071_070--Hb_002890_130 Hb_002071_070--Hb_002830_010 Hb_012632_010 Hb_012632_010 Hb_002071_070--Hb_012632_010 Hb_011618_070 Hb_011618_070 Hb_000243_260--Hb_011618_070 Hb_011883_020 Hb_011883_020 Hb_000243_260--Hb_011883_020 Hb_003758_010 Hb_003758_010 Hb_000243_260--Hb_003758_010 Hb_000243_260--Hb_002631_210 Hb_001473_110 Hb_001473_110 Hb_000347_400--Hb_001473_110 Hb_000347_390 Hb_000347_390 Hb_000347_400--Hb_000347_390 Hb_002234_090 Hb_002234_090 Hb_000347_400--Hb_002234_090 Hb_004916_010 Hb_004916_010 Hb_000347_400--Hb_004916_010 Hb_003906_200 Hb_003906_200 Hb_000347_400--Hb_003906_200 Hb_022425_060 Hb_022425_060 Hb_000347_400--Hb_022425_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.29742 6.1899 4.72157 6.2065 2.49642 2.49044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.78819 3.57683 5.24632 4.94496 4.63246

CAGE analysis