Hb_020178_050

Information

Type desease resistance
Description Gene Name: RPW8
Location Contig20178: 41316-44565
Sequence    

Annotation

kegg
ID rcu:RCOM_1591970
description leucine-rich repeat-containing protein, putative
nr
ID XP_012071716.1
description PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
swissprot
ID Q9SZA7
description Probable disease resistance protein At4g33300 OS=Arabidopsis thaliana GN=At4g33300 PE=2 SV=3
trembl
ID A0A067KTU9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04328 PE=4 SV=1
Gene Ontology
ID GO:0043531
description probable disease resistance protein at4g33300

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20524: 41352-44118
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020178_050 0.0 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
2 Hb_002942_110 0.0925110159 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
3 Hb_001369_770 0.1030472491 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
4 Hb_000448_060 0.1130640665 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
5 Hb_004324_060 0.113628765 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
6 Hb_004195_120 0.1136523672 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
7 Hb_000538_190 0.1170265964 - - PREDICTED: protein DJ-1 homolog D [Jatropha curcas]
8 Hb_003226_110 0.133731074 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
9 Hb_004032_310 0.1360100337 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
10 Hb_001231_080 0.1366085809 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 [Fragaria vesca subsp. vesca]
11 Hb_000802_190 0.1375218027 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
12 Hb_089100_040 0.1400075005 - - PREDICTED: uncharacterized protein LOC105638961 [Jatropha curcas]
13 Hb_005649_090 0.1415592268 - - PREDICTED: ninja-family protein AFP3-like [Jatropha curcas]
14 Hb_000362_090 0.1437916972 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
15 Hb_002774_150 0.1441257362 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]
16 Hb_000940_160 0.144651228 - - hypothetical protein VITISV_017596 [Vitis vinifera]
17 Hb_001699_150 0.1451419207 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
18 Hb_001865_060 0.1462056233 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
19 Hb_003895_020 0.1462182071 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
20 Hb_000649_300 0.1467212688 transcription factor TF Family: Tify JAZ9 [Hevea brasiliensis]

Gene co-expression network

sample Hb_020178_050 Hb_020178_050 Hb_002942_110 Hb_002942_110 Hb_020178_050--Hb_002942_110 Hb_001369_770 Hb_001369_770 Hb_020178_050--Hb_001369_770 Hb_000448_060 Hb_000448_060 Hb_020178_050--Hb_000448_060 Hb_004324_060 Hb_004324_060 Hb_020178_050--Hb_004324_060 Hb_004195_120 Hb_004195_120 Hb_020178_050--Hb_004195_120 Hb_000538_190 Hb_000538_190 Hb_020178_050--Hb_000538_190 Hb_002942_110--Hb_004195_120 Hb_128695_030 Hb_128695_030 Hb_002942_110--Hb_128695_030 Hb_002942_110--Hb_001369_770 Hb_002942_110--Hb_004324_060 Hb_003895_020 Hb_003895_020 Hb_002942_110--Hb_003895_020 Hb_001369_770--Hb_000538_190 Hb_000599_130 Hb_000599_130 Hb_001369_770--Hb_000599_130 Hb_001369_770--Hb_004195_120 Hb_005203_020 Hb_005203_020 Hb_001369_770--Hb_005203_020 Hb_004032_310 Hb_004032_310 Hb_000448_060--Hb_004032_310 Hb_002915_070 Hb_002915_070 Hb_000448_060--Hb_002915_070 Hb_000062_080 Hb_000062_080 Hb_000448_060--Hb_000062_080 Hb_002154_020 Hb_002154_020 Hb_000448_060--Hb_002154_020 Hb_001865_060 Hb_001865_060 Hb_000448_060--Hb_001865_060 Hb_000805_230 Hb_000805_230 Hb_000448_060--Hb_000805_230 Hb_004324_060--Hb_003895_020 Hb_002774_150 Hb_002774_150 Hb_004324_060--Hb_002774_150 Hb_172421_010 Hb_172421_010 Hb_004324_060--Hb_172421_010 Hb_000866_080 Hb_000866_080 Hb_004324_060--Hb_000866_080 Hb_012038_010 Hb_012038_010 Hb_004324_060--Hb_012038_010 Hb_000227_310 Hb_000227_310 Hb_004195_120--Hb_000227_310 Hb_005649_090 Hb_005649_090 Hb_004195_120--Hb_005649_090 Hb_003226_110 Hb_003226_110 Hb_004195_120--Hb_003226_110 Hb_004310_040 Hb_004310_040 Hb_004195_120--Hb_004310_040 Hb_004319_070 Hb_004319_070 Hb_004195_120--Hb_004319_070 Hb_003525_020 Hb_003525_020 Hb_000538_190--Hb_003525_020 Hb_000538_190--Hb_002942_110 Hb_004976_060 Hb_004976_060 Hb_000538_190--Hb_004976_060 Hb_089100_040 Hb_089100_040 Hb_000538_190--Hb_089100_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8612 81.7913 30.5976 16.1474 15.6533 21.3473
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.43628 1.68792 5.00503 29.5271 16.0909

CAGE analysis