Hb_020178_070

Information

Type -
Description -
Location Contig20178: 57764-68875
Sequence    

Annotation

kegg
ID rcu:RCOM_1591990
description Protein Z, putative (EC:2.7.11.1)
nr
ID XP_002510281.1
description Protein Z, putative [Ricinus communis]
swissprot
ID Q9S7T8
description Serpin-ZX OS=Arabidopsis thaliana GN=At1g47710 PE=1 SV=1
trembl
ID B9R7I8
description Protein Z, putative OS=Ricinus communis GN=RCOM_1591990 PE=3 SV=1
Gene Ontology
ID GO:0005615
description serine protease inhibitor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20528: 57895-65633 , PASA_asmbl_20529: 64959-65146 , PASA_asmbl_20531: 59213-59499
cDNA
(Sanger)
(ID:Location)		 027_H11.ab1: 58784-65626

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020178_070 0.0 - - Protein Z, putative [Ricinus communis]
2 Hb_001248_130 0.0645967868 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
3 Hb_000567_260 0.0745449349 - - BnaA09g41440D [Brassica napus]
4 Hb_001671_020 0.0762112693 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
5 Hb_001881_020 0.0781994048 - - clathrin binding protein, putative [Ricinus communis]
6 Hb_021650_030 0.0800381022 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
7 Hb_002411_200 0.0815491199 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000840_210 0.0833722153 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
9 Hb_189003_080 0.0849962624 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
10 Hb_001195_690 0.0879645502 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
11 Hb_012022_030 0.0907206689 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
12 Hb_000174_070 0.0910703559 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
13 Hb_000041_050 0.0912638225 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
14 Hb_061802_020 0.0926112473 - - zinc finger family protein [Populus trichocarpa]
15 Hb_028872_140 0.0928360984 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
16 Hb_000091_090 0.0929770179 - - hypothetical protein JCGZ_09031 [Jatropha curcas]
17 Hb_008066_010 0.0932929733 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]
18 Hb_002137_020 0.0933464966 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_003052_100 0.0956147209 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_071736_020 0.0959646583 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]

Gene co-expression network

sample Hb_020178_070 Hb_020178_070 Hb_001248_130 Hb_001248_130 Hb_020178_070--Hb_001248_130 Hb_000567_260 Hb_000567_260 Hb_020178_070--Hb_000567_260 Hb_001671_020 Hb_001671_020 Hb_020178_070--Hb_001671_020 Hb_001881_020 Hb_001881_020 Hb_020178_070--Hb_001881_020 Hb_021650_030 Hb_021650_030 Hb_020178_070--Hb_021650_030 Hb_002411_200 Hb_002411_200 Hb_020178_070--Hb_002411_200 Hb_001248_130--Hb_000567_260 Hb_189003_080 Hb_189003_080 Hb_001248_130--Hb_189003_080 Hb_007441_120 Hb_007441_120 Hb_001248_130--Hb_007441_120 Hb_000207_250 Hb_000207_250 Hb_001248_130--Hb_000207_250 Hb_002016_110 Hb_002016_110 Hb_001248_130--Hb_002016_110 Hb_000567_260--Hb_001671_020 Hb_000614_230 Hb_000614_230 Hb_000567_260--Hb_000614_230 Hb_001329_300 Hb_001329_300 Hb_000567_260--Hb_001329_300 Hb_000567_260--Hb_189003_080 Hb_055062_030 Hb_055062_030 Hb_000567_260--Hb_055062_030 Hb_007380_070 Hb_007380_070 Hb_001671_020--Hb_007380_070 Hb_001671_020--Hb_055062_030 Hb_002603_100 Hb_002603_100 Hb_001671_020--Hb_002603_100 Hb_001671_020--Hb_189003_080 Hb_001243_050 Hb_001243_050 Hb_001671_020--Hb_001243_050 Hb_000671_150 Hb_000671_150 Hb_001881_020--Hb_000671_150 Hb_001881_020--Hb_021650_030 Hb_000091_090 Hb_000091_090 Hb_001881_020--Hb_000091_090 Hb_001881_020--Hb_002411_200 Hb_000086_570 Hb_000086_570 Hb_001881_020--Hb_000086_570 Hb_021650_030--Hb_000091_090 Hb_021650_030--Hb_002411_200 Hb_021650_030--Hb_000086_570 Hb_002078_450 Hb_002078_450 Hb_021650_030--Hb_002078_450 Hb_014720_080 Hb_014720_080 Hb_021650_030--Hb_014720_080 Hb_002411_200--Hb_000086_570 Hb_002411_200--Hb_000091_090 Hb_002411_200--Hb_014720_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.3206 38.0909 19.6517 28.9417 51.7138 87.5501
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
112.523 68.8556 102.998 42.4295 12.8409

CAGE analysis